Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1461 114 1e-20 seq140 109 5e-19 seq52 93.3 4e-14 seq356 89.7 5e-13 seq64 89.7 5e-13 seq89 86.0 6e-12 >seq1461 Length=5937 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || |||||||| ||| | || || || | | | Sbjct 3666 ATGCAAATCTTTGTTAAAACACTCACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGC 3725 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | |||||| ||| || | ||||| || || || || | |||| Sbjct 3726 GACAACATCGAGAATG--TAAAGACAAAGATTCAAGACAAGGAAGGTATCCCACCAGACC 3783 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||||| ||| || ||||| | || |||| || || || || |||| Sbjct 3784 AACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACA 3843 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||| | || || ||||| || || | || ||||| || Sbjct 3844 ACATCCAAAAGGAATCCACTCTCCATTTAGTACTCAGATTAAGAGGTGG 3892 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || |||||||| ||| | || || || | | Sbjct 4350 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGT 4409 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||||| | ||||| || || || || | || ||| Sbjct 4410 GACAACATTGAGAATGTTAAGACCAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAA 4469 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| ||| || ||||| |||| || | || || || || |||||| Sbjct 4470 CAACGTCTCATTTTCGCCGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 4529 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||||| || || | || ||||| || Sbjct 4530 ATCCAAAAGGAATCCACTCTCCATTTAGTACTCAGATTAAGAGGTGG 4576 >seq140 Length=35707 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| || || || ||||||||||| |||| || || | || Sbjct 26233 AATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACCATCACTCTCGAAGTTGAAGGCAG 26174 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| ||||||| |||||||| || ||||| | |||| Sbjct 26173 TGACAATATCGAGAACG-TAAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACC 26115 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| | | |||| ||| || ||||| | || || | || || || || |||| Sbjct 26114 AACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACA 26055 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||| | || || ||||| || || | || ||||| || Sbjct 26054 ACATCCAAAAAGAATCCACTCTTCATTTAGTTCTTAGATTAAGAGGTGG 26006 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || ||||| ||||| | || || || | | Sbjct 25776 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACAATCACATTGGAAGTTGAAGGTTCT 25717 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| ||||||| |||||||| || || || | |||||| Sbjct 25716 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAA 25657 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| ||| || ||||| |||| || | || || || || |||||| Sbjct 25656 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 25597 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || || || || || | || ||||| || Sbjct 25596 ATCCAAAAAGAATCCACTCTCCACTTAGTTCTTAGATTAAGAGGTGG 25550 >seq52 Length=54870 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || ||||| || ||| | || || || | || Sbjct 46148 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACAATTACCTTGGAGGTTGAAGGCAGT 46207 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | |||| || |||| || ||||| || || || | || || Sbjct 46208 GATAACATTGAGAACG-TCAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGATCA 46266 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || |||| ||| || ||||| |||| || | || || || ||||| || Sbjct 46267 ACAACGTCTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGACTATAA 46326 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || || |||||||| | | || ||||| || Sbjct 46327 CATCCAAAAGGAATCCACTCTCCATTTGGTTTTAAGATTAAGAGGTGG 46374 >seq356 Length=19801 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || ||||| |||||| | || || || | | Sbjct 11357 ATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACAATCACCTTAGAGGTTGAAGGTTCT 11298 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| || |||| || ||||| || || || | || ||| Sbjct 11297 GATAATATCGAAAATGTAAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGATCAA 11238 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| || ||||| |||| || | || || ||| ||||| ||| Sbjct 11237 CAACGTCTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTATAAC 11178 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||| | || || ||||| || || Sbjct 11177 ATCCAAAAGGAATCAACTCTTCATTTAGTTCT 11146 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| || || ||||| || || || ||||||||||| | || || || | Sbjct 11817 AAATATGCAAATTTTTGTTAAAACTCTTACAGGTAAAACCATCACTTTAGAAGTTGAAGG 11758 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | ||| |||||| ||||| | || ||||| || ||||| | || Sbjct 11757 TTCTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGA 11698 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||| | | |||| ||| || ||||| | || || | || ||| | || || Sbjct 11697 CCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACCTTATCAGATTA 11638 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||| | || || || || || || | || ||||| || Sbjct 11637 TAACATTCAAAAAGAATCCACTCTCCACTTAGTTCTTAGATTAAGAGGTGG 11587 >seq64 Length=50952 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || ||||| || || | || || || | || Sbjct 24282 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACAATTACATTGGAAGTTGAAGGCAGT 24223 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | |||| || |||| || ||||| || || || | || ||| Sbjct 24222 GATAACATTGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGATCAA 24163 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| || ||||| | || || | || || ||| |||||| ||| Sbjct 24162 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTATAAC 24103 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || |||||||| | | || ||||| || Sbjct 24102 ATCCAAAAGGAATCCACTCTCCATTTGGTTTTAAGATTAAGAGGTGG 24056 >seq89 Length=43963 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| ||||| | || || ||||||||||| |||| || || | Sbjct 14107 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14166 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | ||||| | |||| || || | |||||||| || || || | || Sbjct 14167 TCAGACAACATCGAAAACG-TCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGA 14225 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || || || | || || ||||| | || || | || || | ||| || Sbjct 14226 TCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTA 14285 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||| | || || || || || | | || ||||| || Sbjct 14286 TAACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 14336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500153349530240