Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2826 250 3e-61 seq1790 104 3e-17 seq2472 86.0 8e-12 seq2563 84.2 3e-11 seq861 82.4 9e-11 seq316 82.4 9e-11 >seq2826 Length=2534 Score = 250 bits (276), Expect = 3e-61 Identities = 1133/1772 (64%), Gaps = 72/1772 (4%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||||| ||||| || | || ||||||||||| || || ||||| |||| Sbjct 2053 CCACAACATATGTTGATGCGTGTTTCCATTGGTATCCATGGCGAGGACATTGAGTCTGCG 1994 Query 111672 TTGGAGACATA-CGACAAGATGTCCCGTGGTA--TGTTCATCCACGCAACACCAACCCTC 111728 | | || || |||| | | || | | | |||| || || |||||||| | Sbjct 1993 ATCAACACCTATCGACG---TCTATCGGAGAAACTATTCACACATGCCACACCAACATTA 1937 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 ||||||||||||||||| ||| |||||||| |||||| | || || |||||| Sbjct 1936 TTCAACGCTGGTACACCTTCACCACAAATGTCTTCATGTTTCTTGGTTCAAATGAAGGAG 1877 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 ||||||||| |||| || || | ||| | | ||||||| || |||||| | || Sbjct 1876 GATTCAATCGATGGTATCTATGACACCTTGAAACAATGTGCATTGATTTCAAAGAGTGCC 1817 Query 111849 GGTGGTATCGG-GATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 |||||||| || | ||| | | ||| | | | ||| | | |||| | ||||| Sbjct 1816 GGTGGTATTGGTGTTGC-CGTACATAAAATTCGTGCCGCTCAAAGTTATATTCGTGGTAC 1758 Query 111908 AAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 ||||| | | || ||||| | | ||||||||||| || || || | || || || | Sbjct 1757 CAATGGCACTAGCA-ATGGTTTGGTACCAATGCTTCGTGTTTTCAATGATACCGCTCGTT 1699 Query 111967 ATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | || | |||| ||| | | ||||| | | || || || | |||||||||| Sbjct 1698 ACGTCGATCAAGGTGGTGGCAAAAGAAAGGGTGCCTTTGCCGTATACTTGGAGCCATGGC 1639 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA------GGTGATGAGGAGG 112077 | || ||| || | ||||| | || |||||| || || | |||||| Sbjct 1638 ATGCCGATGTCTTTGAGTTTATCGA------TCTCAAGAAAAACACTGGCAAGGAGGAGA 1585 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 | | | ||||| |||| || |||||| || ||| |||| ||| || | || | Sbjct 1584 TGAGAGCTAGAGATCTATTCTATGCCCTCTGGGTTAGTGATATCTTTATGGAGCGTGTCG 1525 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGC-C 112196 | | | ||| ||||||| |||||||||||| || | |||||||||||| | || | | Sbjct 1524 AACAAAATGGTGATTGGTCACTCTTTTGTCCAAACGAAGCACCCGGTCTCGCTGAAACTC 1465 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAA--AG---TCGGGCGA 112251 | || | | | ||||||||| |||||| |||| | | || ||| || Sbjct 1464 ATTCCCAAGAACATCGT-GCCCTCTACTTAAAGTATGAGGCAACACCAGACCTCGCAAGA 1406 Query 112252 C-TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 112310 | || | | ||| || | ||| || ||| | | || ||| || ||| Sbjct 1405 CGTGTAA---TCAAAGCACAAGAACTTTGGTTCGCCATTATGGAATCACAAGTTGAAACT 1349 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAA--CCAAAAGAGTAATCAAAAGAATT 112368 |||||||||| || | || || ||||| || || ||||| |||||| | ||| Sbjct 1348 GGTACACCATTCATCTTGTATAAGGACGCTTGCAATTCCAAATCC--AATCAACAAAATC 1291 Query 112369 TGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 112428 | ||| || | ||| || || || || |||||| | ||| ||| ||||| Sbjct 1290 TCGGTACCATTAGTAGTAGTAATCTTTGCACTGAAATCATTCAATACACATCACCAGATG 1231 Query 112429 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGAC-- 112486 | | || || || || ||||| ||||| || || || || | | || | |||| Sbjct 1230 AAATTGCAGTTTGCAATCTCGCCTCAATTGCCCTTCCAAAATTCATTCGTCAAAAGACGG 1171 Query 112487 --------------AAAGACA-----TTTGATTATGAAAAACTCCACGAAGTTACGAAAA 112527 ||||| | |||||| || || ||| ||| | || || Sbjct 1170 GTTCAACCGATCCAAAAGAGAAGGAGTTTGATCATCAATTCCTCTTTGAAATCACCAAGT 1111 Query 112528 CTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTC 112587 |||| || || ||| | |||||| | || ||||| || || | ||| Sbjct 1110 TGATCACTGTCAATCTCAACGTTATCATTGATCGTAACTTTTATCCTGTGGTCGAGGCTA 1051 Query 112588 GTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTAT 112647 | || ||| | ||||| |||||||||||| | ||| |||||||| | || ||||| | Sbjct 1050 AAACTTCAAATCTTAGACATCGTCCAATTGGTATTGGTATCCAAGGTTTAGCCGATGTTT 991 Query 112648 TCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATAT 112707 |||||| || | |||||| | | || || | |||| || Sbjct 990 TCATTCAAATGCGTATGCCTTTTGATAGTGTTGCCGCCGCTAAATTAAATGTTGAAATCG 931 Query 112708 TTGAGACAATGTATCACGCCGCTCTTGAG-GCGAGTTCGGAGTTGGCAGAGGTTGATGGT 112766 ||| || || ||| ||| ||| |||| || | || |||||| ||||||| Sbjct 930 CTGAAACCATCTATTTCGCAGCT-TTGACCGCCTCTCATGAATTGGCACTACGTGATGGT 872 Query 112767 CCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 112826 |||||||| | || | || || ||||| || |||| | ||||||| ||||||||| Sbjct 871 CCATATGAGTCTTTCCAAGGCTCACCAGCATCCAAAGGTATCCTTCAATACGATATGTGG 812 Query 112827 GAAGGTGAGACCAAGCTTCACTACG--ACTGGGACGCTCTCAAGGA-ACG--CATCAAGG 112881 ||| ||| ||||| ||||| | | |||| | || || || | | | |||| Sbjct 811 AAAG-TGACTCCAAG-TTCACGTTGGAATTGGGCAGACCTAAAAGATAAGATCGTCAATA 754 Query 112882 AGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA 112941 | ||| | |||||| || || || |||||||||||||| || || || |||| Sbjct 753 AAGGTGGTTTACGTAACTCCCTCTTAATTGCACCAATGCCAACCGCTTCAACTAGTCAAA 694 Query 112942 TCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCC 113001 || | ||||| || |||||||||||||| ||||| | ||||| || | | Sbjct 693 TCCTTGGTAACAACGAATGCTTTGAACCATACACTTCAAACATTTACAGTCGTCGTGTAT 634 Query 113002 TCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTC 113061 | || || |||||| || ||||| || || | |||| || || | || | ||| Sbjct 633 TGGCTGGTGAGTTTACTATCGTCAATAAACAATTGTTGGAGGATCTTATGGAATTGGGTA 574 Query 113062 TCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTG 113121 | ||| | || |||||| ||| || | ||| ||||||| || ||| |||| Sbjct 573 TTTGGACACCAGAGATGAAGAATCAAATCATTGCAGCACGTGGTTCAATCCAATCCATTG 514 Query 113122 TGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGG 113181 | |||||||||||| | || | | || || ||||||||||| | ||| Sbjct 513 GTGGCATTCCAGATGAATTGAAAGAACTCTATAAAACCGTTTGGGAAATTC-GTCAAAGA 455 Query 113182 A-TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAAT 113240 | | ||||||| |||||||| ||||||||| ||||||||||||||||||||| | || Sbjct 454 ACTCTCATTGATATGGCCGCTGATCGTGGTGCTTTCATTGATCAAAGTCAAAGTTTCAAC 395 Query 113241 CTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAG 113300 | ||||| | ||||| | |||| ||| | || |||||| | || ||||||| Sbjct 394 GTTTTCATCGCTGAACCAACCTTTGCCAAACTCACCTCAATGCACTTTTATTCTTGGAAG 335 Query 113301 AAGGGTCTCAAAACGGGGATGTATTACCTCCG 113332 || ||| | || || || ||||| || || || Sbjct 334 AAAGGTTTAAAGACTGGTATGTACTATCTTCG 303 >seq1790 Length=4853 Score = 104 bits (114), Expect = 3e-17 Identities = 327/499 (66%), Gaps = 11/499 (2%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 ||| || | |||||| | ||| | || | ||| | |||||| | ||| || || || Sbjct 1703 ATCGAATCTACCTGGTCTAAGTAATGCTTTATCCAAGATATCGGGTCTATTGGTGGCAGC 1644 Query 15947 GATGACAACAATACCTGTTTCGTTA--TCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | |||||||| | | |||| | | ||||||||||| || ||| || || || Sbjct 1643 CAAGACAACAACA--TTTTTCAATGGTTTGAAACCATCCATTTCAACCAATAGTTGATTT 1586 Query 16005 ATAGTTTGTTCCCGTTCATCATTCG---CTGGCATACCACCAGCACTGCGTTGCTTTCCC 16061 | ||| | ||| ||||||||||| | | | | |||||| || | ||||| | || Sbjct 1585 AGAGTGTTTTCACGTTCATCATTTGAACCAGAGAAACCACCTTTACCTC-TTGCTCTACC 1527 Query 16062 ACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 16120 | ||||| || ||||||||||| || || |||||| ||| | | || |||||| Sbjct 1526 AATTGCATCGATTTCATCAATGAATACAATACATGGTGCATTCTTTCTTGCTTGTTCAAA 1467 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 | ||| | ||||| | || ||||||||||||||||| || || | || | Sbjct 1466 TAAATCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATCTG-AACCAC 1408 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | ||| | ||| || ||||| | |||||| || | ||| ||| | | || |||| Sbjct 1407 TCGTTGAAAAGAATGGTACATTTGCTTCACCTGCGGTTGCTTTGGCAATCAATGTTTTAC 1348 Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 16299 | |||||||| || | | | ||||||| ||| ||||| || ||| | || | Sbjct 1347 CTGTACCTGGTGGTCCAACTAAAATTGCACCTCTTGGTATCTTTGCTCCAATGTCATGGA 1288 Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAA 16359 || ||| || | ||| | ||| | |||| ||||| | || |||| || | ||| Sbjct 1287 ATTTCTTTGGATTCTTTAAAAAGTTTACAAATTCTTCAATCTCTACTTTTGCTTCACCAA 1228 Query 16360 TCCCCTCAACATCGGTAAA 16378 || ||||||| |||| Sbjct 1227 GTCCTGCAACATCTTTAAA 1209 >seq2472 Length=3280 Score = 86.0 bits (94), Expect = 8e-12 Identities = 190/280 (68%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 36063 AGTTTATACATTTTAGCACGGATGAAGTGTATGGTG------AATCCA-AAACCGATGAA 36115 ||||||||||| |||| || |||||||| |||||| ||| | ||| || || Sbjct 2400 AGTTTATACATGTTAGTACTGATGAAGTTTATGGTTGTGGAAAATTTATAAATAGAGAAA 2459 Query 36116 CCTTTTACAGAGGACACGGGTGTTTTACGACCAACCAACCCATATTCGGCTTCAAAGGCG 36175 ||| | ||| | | | ||| |||||| || ||||| || || || || Sbjct 2460 TATTTCA-AGAAAATAAAACCCTATTAAAACCAACAAATCCATACTCTGCAAGTAAAGCA 2518 Query 36176 GCGGCAGAAATGATTGTGATGTCATACATTGAATCATTTAATATGAATATTAAAATTTTA 36235 | |||||| ||||| | ||| | ||||||||| || | | |||| | Sbjct 2519 TCAGCAGAACATTTTGTGCAATGCTACCATACATCATTTAAAATACCAACCACAATTGTT 2578 Query 36236 AGATGTAACAATGTGTATGGTCCGAATCAATATCCAGAAAAACTCATTCCAAAGTTTAAA 36295 ||| || |||||||||||||| || ||||||| |||||||| |||||||| ||| | Sbjct 2579 AGAATGAATAATGTGTATGGTCCCAAACAATATCATGAAAAACTAATTCCAAAATTT-AT 2637 Query 36296 CGACTT-TTGAGAAACAATGAAAAGTGTACAATCCATGGT 36334 | | || || ||| |||||||| |||||||| |||||| Sbjct 2638 CAATTTATTATCAAAAAATGAAAAATGTACAATTCATGGT 2677 >seq2563 Length=3094 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/286 (67%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||| | |||||| || | |||||| ||||| | || ||| | | ||| ||||| Sbjct 1218 GATTTGACGATCGAATCTACCTGGACGAAGTAATGCTGGATCTAAAACATCGCTACGATT 1277 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAG 15997 || | |||| ||||| | ||| | | | ||||||||||||||| ||| || Sbjct 1278 TGTACCAGCGAATACAACGACACCAGATGTAGAAGAGAAACCATCCATCTCTACCAATAG 1337 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTT 16057 || || | || | || | |||||||| ||| | ||||||| | | ||| Sbjct 1338 TTGATTCAATGTATTCTCTCTCTCATCATTG--TGGAA-ACCACCACGTGATC-TCGCTC 1393 Query 16058 TCCCA-CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT 16116 | ||| ||||||| || ||||| ||||| |||||||| ||| ||| | || || ||| Sbjct 1394 TGCCAACGGCATCGATTTCATCGATGAATACGATGCAAGGTGTGTTTGCACGTGCCTCTT 1453 Query 16117 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTC 16162 ||||||||| | ||||| | || || |||||||||||||| Sbjct 1454 TAAAGAGATCTCTAACACGAGATGGACCAACGCCAACAAACATCTC 1499 >seq861 Length=9344 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 176892 CATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAA 176951 ||||||| |||||| || ||||| | ||||| ||||| || || ||||||| Sbjct 2581 CATCACGTACATTCAATAGTTTTCCACGTAATGGGAAAACACCATATGCATTACGACCAA 2522 Query 176952 CCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTG 177011 ||||| | ||| || | || | | ||| ||||||||||||||||| | || | || Sbjct 2521 CCACACCTAAACCTGCCAATGCCAATGATTTAGCAGAATCACCCTCTGTTATAATTAATG 2462 Query 177012 TACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAAT 177066 |||||| |||| || ||| ||| ||| |||||||||||||| | ||| Sbjct 2461 TACACTCTTTTGATTTTGGTCCACCTGCCCAGTTTGCATCATCCAATTTAGAAAT 2407 >seq316 Length=22015 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/225 (69%), Gaps = 11/225 (5%) Strand=Plus/Plus Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG-TG 102151 ||| | || || ||||| |||||||| || ||||||| || || ||||| || ||| || Sbjct 20546 TTTAATGCAATTGAAACAATTCCATGTGTTAAAAAGAAGGCAGAATGGGC-ATTAAGATG 20604 Query 102152 GTTT---GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208 | || ||| |||| ||| ||||| || || | | |||||||| ||||| Sbjct 20605 GATTAATGATTCAAA------TTCATTTGCAGAACGTTTGGTTGCATTTGCAGCAGTTGA 20658 Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268 |||||| || ||| |||| || || | |||| |||| | || ||| ||||| | || Sbjct 20659 GGGTATATTTTTCAGTGGTAGTTTTTGTTCAATTTTTTGGTTGAAAAAGAGAGGTTTAAT 20718 Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||||||| | || || || || | || || ||||| || || Sbjct 20719 GCCAGGTTTAACATTTTCAAATGAATTGATTTCACGTGATGAAGG 20763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620718260879920