Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2826 140 4e-28 >seq2826 Length=2534 Score = 140 bits (154), Expect = 4e-28 Identities = 294/431 (68%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 |||||||| |||||||| || || | ||| |||||| | || | |||||||| | | Sbjct 303 CGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAGGTG 362 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACT--GATCGATGA 109525 ||||||| || || || | || || | ||| | ||| |||| |||| |||| Sbjct 363 AGTTTGGCAAAGGTTGGTTCAGCGATGAAAACGTTGAA--ACTTTGACTTTGATCAATGA 420 Query 109526 ATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCT 109585 | |||||||||||| ||||| || |||| | |||| | ||||||||| || || | Sbjct 421 AAGCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGACGAATTTCCCAAACGGTTT 480 Query 109586 TGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCT 109645 | || | | || | ||||| |||||| | | ||| ||| || || |||| | || Sbjct 481 TATAGAGTTCTTTCAATTCATCTGGAATGCCACCAATGGATTGGATTGAACCACGTG-CT 539 Query 109646 TCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT-CA 109701 || |||| ||| |||||||||| | ||| | ||| | | | ||||| | || Sbjct 540 GCA--ATGATTTGATTCTTCATCTCTGGTGTCCAAATACCCAATTCCATAAGATCCTCCA 597 Query 109702 ACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTA 109761 |||| || || ||||| | ||| |||||||| | | || || ||| ||||| Sbjct 598 ACAA-TTGTTTATTGACGATAGTAAACTCACCAGCCAATACACGACGACTGTAAATGTTT 656 Query 109762 GTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGC 109821 | ||||| ||||| || || || ||||| || |||||||| ||| ||||| || ||| Sbjct 657 GAAGTGTATGGTTCAAAGCATTCGTTGTTACCAAGGATTTGACTAGTTGAAGCGGTTGGC 716 Query 109822 ATGGGAGCCAT 109832 || || || || Sbjct 717 ATTGGTGCAAT 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588953096195800