Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2826 178 2e-39 seq1790 116 4e-21 seq117 91.5 2e-13 seq861 84.2 3e-11 >seq2826 Length=2534 Score = 178 bits (196), Expect = 2e-39 Identities = 1124/1772 (63%), Gaps = 72/1772 (4%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 || ||||||||||| || ||||| | |||| ||||| | || | ||||| || | | Sbjct 303 CGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAGGTG 362 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 || |||| | ||||| | ||||||| || | ||||||||| || |||||||| Sbjct 363 AGTTTGGCAAAGGTTGGTTCAGCGATGAAAACGTTGAAACTTTGACTTTGATCAATGAAA 422 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTGATTTCCCACACTGTGCG 105768 |||||| | || ||||||||||||| | | ||| | |||||||| || || Sbjct 423 GCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGACGA-ATTTCCCAAACGGTTTT 481 Query 105769 GTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTT 105828 ||||| | || | |||||||| || | || ||| |||||||| | || | Sbjct 482 ATAGAGTTCTTTCAATTCATCTGGAATGCCACCAATGGATTGGATTGAACCACGTGC--T 539 Query 105829 GACCATGA---GATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGAC 105885 | | |||| ||| |||||| || | ||||| ||| | | | | ||||| | | Sbjct 540 G-CAATGATTTGATTCTTCATCTCTGGTGTCCAAATACCCAATTCCATAAGATCCTCCAA 598 Query 105886 GAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGT 105945 | || || ||||| || |||||| || || | | | || ||||| | Sbjct 599 CAATTGTTTATTGACGATAGTAAACTCACCAGCCAATACACGACGACTGTAAATGTTTGA 658 Query 105946 CGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 106005 ||||| |||||||||||||| || ||||| | |||||| || || || |||||||| Sbjct 659 AGTGTATGGTTCAAAGCATTCGTTGTTACCAAGGATTTGACTAGTTGAAGCGGTTGGCAT 718 Query 106006 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATG--CGT-TCCTTGAGAAC 106062 |||||| || || || |||||| | ||| || |||| | | | || || || | Sbjct 719 TGGTGCAATTAAGAGGGAGTTACGTAAACCACCTTTATTGACGATCTTATCTTTTAGGTC 778 Query 106063 ATCCCAGT-CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTT 106121 |||| | | | ||| ||||| |||| |||| ||||||| ||||||| | |||| Sbjct 779 TGCCCAATTCCAACGTGAACTTGGAGTCACTTTCC-ACATATCGTATTGAAGGATACCTT 837 Query 106122 GGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181 ||| | || || || | || | |||||| | ||| | | ||||||||| Sbjct 838 TGGATGCTGGTGAGCCTTGGAAAGACTCATATGGACCATCACGTAGTGCCAATTCATGAG 897 Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241 || || | |||| ||| ||||||||| ||| | |||| | | ||| Sbjct 898 AGGCGGTCAAAGCTGCGAAATAGATGGTTTCAGCGATTTCAACATTTAATTTAGCGGCGG 957 Query 106242 CATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCC 106300 || | |||||| | | | ||| ||| || ||||| || | |||||| | ||| Sbjct 958 CAACACTATCAAAAG-GCATACGCATTTGAATGAAAACATCGGCTAAACCTTGGATACCA 1016 Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 106360 | |||||| || | |||| | ||| || || || | || |||||||| || Sbjct 1017 ATACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCCTCGACCACAGGATAAAAGTTA 1076 Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420 | ||||||| ||| ||||| || | | ||| ||||||||| || || | Sbjct 1077 CGATCAATGATAACGTTGAGATTGACAGTGATCAACTTGGTGATTTCAAAGAGGAATTGA 1136 Query 106421 TAATCAAAAG----------TG---CGAGT---CTCTTCATT-GAC--AT--ACTTTGGA 106459 | |||||| || || | | | || || ||| || | |||||| Sbjct 1137 TGATCAAACTCCTTCTCTTTTGGATCGGTTGAACCCGTCTTTTGACGAATGAATTTTGGA 1196 Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 ||||| ||||| || | ||||||||| || | ||||| |||||| | | ||| Sbjct 1197 AGGGCAATTGAGGCGAGATTGCAAACTGCAATTTCATCTGGTGATGTGTATTGAATGATT 1256 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 || || || | || ||| |||| || || | ||| | ||| || || ||| Sbjct 1257 TCAGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGATTTGGAATTG 1316 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639 || || ||||| || | ||| | || || || || || ||||| | | ||| || Sbjct 1317 CAAGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCCATAATGGCG 1376 Query 106640 TTCCACACATCGGCGGCTGG---TACAA---TGGCGTTGGCCCGTCCCTCCGCCTCGTAC 106693 ||| | || ||| |||| | ||| | | || ||||| ||| Sbjct 1377 AACCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGGTGTT---GCCTCATAC 1433 Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 106753 ||| ||||||||| | || | | || | |||||| ||||| | || | Sbjct 1434 TTTAAGTAGAGGGCACGATGTTCTTGGGAATGAGTTTCAGCGAGACCGGGTGCTTCGTTT 1493 Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 ||||| || || ||||| | |||| | || || |||| ||| || | || || | Sbjct 1494 GGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTAACC 1553 Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 || |||| | || ||||||||| | ||| || | || ||| || | | Sbjct 1554 CAGAGGGCATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTTT-TCTTGAG 1612 Query 106874 -TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 || | ||||| | || ||| || ||||||||||| | || || || | | ||||| Sbjct 1613 ATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGGCACCCTT 1672 Query 106933 TCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 || ||| || |||||| || || || || || | || || || ||||||||||| Sbjct 1673 TCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAAGCATTGG 1732 Query 106990 AATAATACCATCTGATTGA-CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 107048 | | ||||| || | | ||||| || || |||||| | || | ||| | | | Sbjct 1733 TACCAAACCAT-TGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGCACGAATTT 1791 Query 107049 CATGGATGTGCATC-CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107 ||| | | ||| | |||||||| || || | |||||| || ||||| | | | Sbjct 1792 TATGTACG-GCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGTTTCAAG 1850 Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTG-TTGGCGATAAGGAAGCAAC-TG--GA 107163 || |||||||||| | |||||| |||||||| || | || ||| ||| || || Sbjct 1851 GTGTCATAGATACCATCGATTGAATCCTCCTTCATTTG----AACCAAGAAACATGAAGA 1906 Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA-TAC 107222 ||| || ||| ||||||||||| ||||| | |||||||| || || |||| | | Sbjct 1907 CATTTGTGGTGAAGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAATAGTTT 1966 Query 107223 CTTGG---GACATCTTGTCG-TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 || | ||| |||| || || | | |||| |||||||| || || ||||| Sbjct 1967 CTCCGATAGAC-----GTCGATAGGTGTTGATCGCAGACTCAATGTCCTCGCCATGGATA 2021 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGG 107310 || |||| |||||||| ||||| | ||| || Sbjct 2022 CCAATGGAAACACGCATCAACATATGTTGTGG 2053 >seq1790 Length=4853 Score = 116 bits (128), Expect = 4e-21 Identities = 330/499 (66%), Gaps = 11/499 (2%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 ||| || | |||||| | ||| | || | ||| | |||||| | ||| || || || Sbjct 1703 ATCGAATCTACCTGGTCTAAGTAATGCTTTATCCAAGATATCGGGTCTATTGGTGGCAGC 1644 Query 9254 GATGACAACAATACCTGTTTCATTA--TCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | |||||||| | | ||||| | | ||||||||||| || ||| ||||| || Sbjct 1643 CAAGACAACAACA--TTTTTCAATGGTTTGAAACCATCCATTTCAACCAATAGTTGATTT 1586 Query 9312 ATAGTTTGTTCCCGTTCATCATTCG---CTGGCATACCACCAGCACTGCGTTGCTTTCCC 9368 | ||| | ||| ||||||||||| | | | | |||||| || | ||||| | || Sbjct 1585 AGAGTGTTTTCACGTTCATCATTTGAACCAGAGAAACCACCTTTACCTC-TTGCTCTACC 1527 Query 9369 ACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 | ||||| || ||||||||||| |||||||||||| ||| | | || |||||| Sbjct 1526 AATTGCATCGATTTCATCAATGAATACAATACATGGTGCATTCTTTCTTGCTTGTTCAAA 1467 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 | ||| | ||| | | | || ||||||||||||||||| || || | || | Sbjct 1466 TAAATCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATCTG-AACCAC 1408 Query 9488 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546 | ||| | ||| || ||||| | |||||| || | ||| ||| | | || |||| Sbjct 1407 TCGTTGAAAAGAATGGTACATTTGCTTCACCTGCGGTTGCTTTGGCAATCAATGTTTTAC 1348 Query 9547 CCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT 9606 | |||||||| || | | | ||||| | ||| ||||| || ||| | || | Sbjct 1347 CTGTACCTGGTGGTCCAACTAAAATTGCACCTCTTGGTATCTTTGCTCCAATGTCATGGA 1288 Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAA 9666 || ||| || | ||| | ||| | |||| ||||| | || |||| || | ||| Sbjct 1287 ATTTCTTTGGATTCTTTAAAAAGTTTACAAATTCTTCAATCTCTACTTTTGCTTCACCAA 1228 Query 9667 TCCCCTCAACATCGGTAAA 9685 || ||||||| |||| Sbjct 1227 GTCCTGCAACATCTTTAAA 1209 >seq117 Length=39445 Score = 91.5 bits (100), Expect = 2e-13 Identities = 120/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 25601 TACTTAGACCAACAAATCCATATTCAGCATCAAAAGCGGCGGCCGAAATGATAGTCCGTT 25660 |||||| |||||| ||||||||||||||| ||||||| || ||| |||| | | Sbjct 5804 TACTTAAACCAACGAATCCATATTCAGCAAGTAAAGCGGGAGCAGAACATTTAGTTCAAT 5863 Query 25661 CATAT-ATAGAATCATTTGATATGAATATCAA-AATAATTCGCTGTAATAATGTTTATGG 25718 ||||| ||| |||||||| | || | | ||| ||||| | |||||| ||||||| Sbjct 5864 CATATTATA-AATCATTTAA-ATTACCAACAATAATAACCAGAGCAAATAATATTTATGG 5921 Query 25719 TCCAAATCAATACCCGGAGAAACTCATTCCAAAGTTTATAA 25759 |||||| ||||| || || || | || ||||| ||||||| Sbjct 5922 TCCAAAACAATATCCTGAAAAGATTATACCAAAATTTATAA 5962 >seq861 Length=9344 Score = 84.2 bits (92), Expect = 3e-11 Identities = 237/357 (66%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 168296 ACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAGTCTGG 168355 ||| || |||||| | ||||| || | | ||||||||| |||| | ||| ||||||| Sbjct 3636 ACCAATTCCTTCGCTACCATTAACCAATAGCATTGGTATAATTGGTACATAATAGTCTGG 3577 Query 168356 TTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGATCAAA 168415 || |||||| || || || || | ||| || | | || |||||| || || Sbjct 3576 TTGAATTGACTCACCTTCTTCTTCGAGGTAATTTAATAGTGGATCATCCAATTCATTGAA 3517 Query 168416 GATCTTGCGAGCCTCTTTGGT--AAGTTTTGTGAAAATGTACCTCGTCTGA-GAAGCATC 168472 | | || || || ||| ||||||||| ||||| || || | |||| | || ||| Sbjct 3516 AAGGTAACGTGCAACT--GGTTCAAGTTTTGTAAAAATATATCTTG-CTGATGCAGAATC 3460 Query 168473 CTTACCACCCATGAGACGCGTACCAAATTGACCACACGGT-TCAAGAAGGTTAATGTTGT 168531 |||||| | ||| |||||||||||||||| ||| | || || | ||| || | Sbjct 3459 TGAACCACCTTGCAAACGAGTACCAAATTGACCACTTGGTGTTAACAATGGTAA-ATTAT 3401 Query 168532 TTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACCAT 168591 ||||||| | | | |||| ||||| || || ||| ||| |||||||| Sbjct 3400 TTGAACCAACAAAATTATGAGCCATTTTAACGATTGTTGAATTTAAAGATTGTTCACCAT 3341 Query 168592 GGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCAT 168648 | ||||| | || | || || ||||| ||| | ||||| || || || |||| Sbjct 3340 GATGGTATGAAGTTTGTTCAGCAACATAACCCGATAATTGTGATACTTTTATCTCAT 3284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589957857121640