Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2406 212 7e-50 >seq2406 Length=3387 Score = 212 bits (234), Expect = 7e-50 Identities = 476/700 (68%), Gaps = 34/700 (5%) Strand=Plus/Plus Query 154443 ATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTGTG 154502 ||| ||||| | || |||||||| |||||||||||||| | | ||| | || || Sbjct 1905 ATGATTCCATTGGGTAGTTGCACTATGAAATTAAATGCCACCACTGAAATGTATCCAGTT 1964 Query 154503 TCATGGGAAGAGTTTG---CTAACGTGCATCCACATACACCTATGATACAGACCATGGGT 154559 |||||| ||||||| ||| | |||||| | ||| | || | |||| Sbjct 1965 TCATGGCCAGAGTTTAACTCTATC---CATCCATTTGTACCATCCAATCAATCATTGGGC 2021 Query 154560 TATCAGAAAATTATAGATG-ACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATT- 154617 || || |||| | ||| | | || | ||| |||||||| | ||||| || ||| Sbjct 2022 TACAAGGAAATGTTTGATTCAATCTCAAATATG-TTATGTGAGGTGACAGGTTTCGATGG 2080 Query 154618 CTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACT----GTTAG-C 154672 || | ||||||||||| || || || || || |||||||||||||| | |||| | Sbjct 2081 CTGT-TCATTACAACCAAATGCTGGCTCTCAAGGTGAGTATGCAGGTTTAATGGTTATTC 2139 Query 154673 AATCCAAGCATACCATCAAG-GATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAG 154731 ||| | | || |||| | ||| || | |||||||||| ||| | || |||| Sbjct 2140 GTTCCTATCTCACT-TCAATTGGTCAA-AG----TCAAAGAAATGTTTGTCTCATTCCAG 2193 Query 154732 AGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTG 154791 ||| || ||||| || |||||||| ||||| | |||| || |||||||| || | || Sbjct 2194 TGTCTGCTCATGGTACCAATCCTGCAAGTGCAGCAATGGTTGGTATGAAAGTAGTGGTTG 2253 Query 154792 TCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCA----ATC 154847 || | |||||| ||||||| || || | |||||| || |||||| | | Sbjct 2254 TCGATTGTGATTCCAATGGTAATATCGATGTAGCAGATCTCAAGGCAAAAGCAGAAAAAC 2313 Query 154848 ATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTT 154907 || || | | | || | | | ||||| || || ||||| || |||||||||||| Sbjct 2314 ATAAAGATACCT----TGGCCGCTCTCATGATCACTTATCCATCAACTCATGGTGTATTT 2369 Query 154908 GAAACTAACATTAGACAGATAT--GTAAGATCGTTCATGACAATGGTGGTCAGGTATATC 154965 ||| | | | |||||| || | ||| |||| ||||||||||||| || ||| Sbjct 2370 GAAG--AGGGTGCCAAAGATATCTGTGACATCATTCACAACAATGGTGGTCAAGTCTATA 2427 Query 154966 TTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAG 155025 | ||||| |||||| | || || || || || || ||| |||| |||||| | Sbjct 2428 TGGATGGCGCAAATATGAACGCTCAAGTTGGTCTTTGTCGTCCAGGTGATATTGGTGCCG 2487 Query 155026 ATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTG 155085 | || |||||| |||| | |||||||| ||||||||||||||||| ||||| ||||| | Sbjct 2488 ACGTTTGTCATTTAAATCTTCATAAAACTTTCTGTATTCCACATGGTGGTGGTGGTCCAG 2547 Query 155086 GCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATT 155125 | | ||||| || | || || |||||| | ||||| Sbjct 2548 GTATGGGTCCAATTTGCGTTAAAACCCATCTCGCTCCATT 2587 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 153216 GGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGT 153275 || || ||||| ||||||||||| | || || || || || || | |||||||| || Sbjct 639 GGCTATTATGGTACCATTACACCACATGTGATTCAACGTAATATTTTGGAGAATCCAGGT 698 Query 153276 TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTA 153335 ||||| ||| | || || || |||||||| ||||| ||| || | || || |||| Sbjct 699 TGGTATACACCCTATACACCATATCAAGCAGAGATTAGTCAAGGTCGTTTAGAGAGTTTA 758 Query 153336 TTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTA 153395 || |||| |||||| | | |||| ||||||| | | ||| ||||| ||||| || Sbjct 759 TTGAATTTCCAAACCATGGTATCAGAGTTTACAGGTCTTCAAATGGCAAATGCATCATTA 818 Query 153396 TTAGATGAAGCAACTGCAGCAGCAGAAGCAATGC 153429 || ||||| || || || || ||||| ||||||| Sbjct 819 TTGGATGAGGCTACAGCCGCCGCAGAGGCAATGC 852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579190275862240