Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2406 199 5e-46 >seq2406 Length=3387 Score = 199 bits (220), Expect = 5e-46 Identities = 471/698 (67%), Gaps = 30/698 (4%) Strand=Plus/Plus Query 159118 ATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTGATGCCTGTG 159177 ||| ||||| | |||||||| ||||||||| |||| || | | ||| || || || Sbjct 1905 ATGATTCCATTGGGTAGTTGCACTATGAAATTAAATGCCACCACTGAAATGTATCCAGTT 1964 Query 159178 TCATGGGAAGAGTTTG---CTAACGTGCATCCACATACACCTATGATACAGACCATGGGT 159234 |||||| ||||||| ||| | |||||| | ||| | || | |||| Sbjct 1965 TCATGGCCAGAGTTTAACTCTATC---CATCCATTTGTACCATCCAATCAATCATTGGGC 2021 Query 159235 TATCAAAAAATTATAGATG-ACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATT- 159292 || | |||| | ||| | | || | ||| |||||||| | ||||| || ||| Sbjct 2022 TACAAGGAAATGTTTGATTCAATCTCAAATATG-TTATGTGAGGTGACAGGTTTCGATGG 2080 Query 159293 CTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACT----GTTAG-C 159347 || | ||||||||||| || || || || || |||||||||||||| | |||| | Sbjct 2081 CTGT-TCATTACAACCAAATGCTGGCTCTCAAGGTGAGTATGCAGGTTTAATGGTTATTC 2139 Query 159348 AATCCAAGCATACCATCAAG-GATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAG 159406 ||| | | || |||| | ||| || | |||||||||| ||| | || |||| Sbjct 2140 GTTCCTATCTCACT-TCAATTGGTCAA-AG----TCAAAGAAATGTTTGTCTCATTCCAG 2193 Query 159407 AGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTG 159466 ||| || ||||| || ||||||||| |||| |||| || |||||||| || | || Sbjct 2194 TGTCTGCTCATGGTACCAATCCTGCAAGTGCAGCAATGGTTGGTATGAAAGTAGTGGTTG 2253 Query 159467 TCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCA----ATC 159522 || | |||||| |||| || || || | |||||| || |||||| | | Sbjct 2254 TCGATTGTGATTCCAATGGTAATATCGATGTAGCAGATCTCAAGGCAAAAGCAGAAAAAC 2313 Query 159523 ATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTT 159582 || || | | | || | | | ||||| || |||||||| || |||||||||||| Sbjct 2314 ATAAAGATACCT----TGGCCGCTCTCATGATCACTTATCCATCAACTCATGGTGTATTT 2369 Query 159583 GAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTT 159642 ||| || | | || ||| | || |||| | ||||||||||| || ||| | Sbjct 2370 GAAGAGGGTGCCAAAGATATCTGTGACATCATTCACAACAATGGTGGTCAAGTCTATATG 2429 Query 159643 GATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGAT 159702 ||||| |||||| | || || || || ||||| ||| |||| |||||| || Sbjct 2430 GATGGCGCAAATATGAACGCTCAAGTTGGTCTTTGTCGTCCAGGTGATATTGGTGCCGAC 2489 Query 159703 GTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGC 159762 || |||||| |||| | ||||| || ||||||||||||||||| ||||| ||||| || Sbjct 2490 GTTTGTCATTTAAATCTTCATAAAACTTTCTGTATTCCACATGGTGGTGGTGGTCCAGGT 2549 Query 159763 GTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATT 159800 | ||||| ||| | || || |||||| | ||||| Sbjct 2550 ATGGGTCCAATTTGCGTTAAAACCCATCTCGCTCCATT 2587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588028332158960