Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq52 96.9 2e-15 seq140 87.8 1e-12 seq356 82.4 5e-11 >seq52 Length=54870 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || || || || |||||||| || | ||| ||| || || ||||||||||| ||| Sbjct 46374 CCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAGTCAGAA 46315 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||| ||||| || || || || || ||||| || ||| | || Sbjct 46314 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGG 46255 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||| ||||||| | || |||| | | ||||| Sbjct 46254 ATACCTTCTTTATCTTGGATCTTGGCTTTGACGTTCTCAATGTTATCACTGCCTTCAACC 46195 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| || ||||| || || | ||| || |||||||| |||||| Sbjct 46194 TCCAAGGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCATA 46147 >seq140 Length=35707 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || || || || || | ||| || || | ||| ||| || ||||||||||| || Sbjct 25091 TTACCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAATCA 25150 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 ||||| | || |||| || | ||||| |||||||| || || ||||| |||||| | Sbjct 25151 GAAAGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGT 25210 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | || || ||||| || || |||||| | | || |||| | ||| Sbjct 25211 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTGTCACTACCTTCA 25270 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | || || ||||| || || | ||| || |||||||| |||||| Sbjct 25271 ACTTCAAGTGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCATA 25321 >seq356 Length=19801 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || || || || | ||| ||||| | ||| |||||| ||||||||||| || || Sbjct 11587 CCACCTCTTAATCTAAGAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTATAATCTGAT 11646 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || | ||||| || || || |||| || ||| |||||| | || Sbjct 11647 AAGGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGA 11706 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||| || ||| || | | || ||| | ||||| Sbjct 11707 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGTTATCAGAACCTTCAACT 11766 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | || |||||||| || || ||||| || ||||| || |||||||| Sbjct 11767 TCTAAAGTGATGGTTTTACCTGTAAGAGTTTTAACAAAAATTTGCATATT 11816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324621291415608