Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq1705 107 3e-18 >seq1705 Length=5068 Score = 107 bits (118), Expect = 3e-18 Identities = 465/736 (63%), Gaps = 26/736 (4%) Strand=Plus/Minus Query 19385 GGGCTGCTCAAGATACTATGCCATTAGACTGGTCTTTACCTTTGGCCAAAGAACTTACTT 19444 ||||||| ||| ||| ||| | | || ||| | ||||| ||||| |||| || Sbjct 4626 GGGCTGCCCAACCTACAATGGGACTTGATTGGGCATTACCATTGGCACAAGATATTTTGC 4567 Query 19445 TATCCGGTAAAGAGACAATTATTTCATTTGGTGGAGCAAGTAACCCAGATATTTCATATA 19504 |||| ||| || ||||||||||||||||| || || ||||||| || | Sbjct 4566 TATCTAATAAGAAGGTTATTATTTCATTTGGTGGTGCTTCAAATTCAGATATCTCCACTT 4507 Query 19505 AATTTTCCATTGATGAATTGGTTCAAACTTACCTTGATGTGATAGAATTATATAATCCAT 19564 |||||| |||| |||||||| ||||||| | || || ||||| ||| | | | Sbjct 4506 CATTTTCTGTTGAAAAATTGGTTGAAACTTATAGTAATACCATTGAATTGTATGGTACTT 4447 Query 19565 CTGGATTAGATTTTGATTTAGAAAATGGTCTGTATGATGCCGAAAAAATAAGTTCAGCTA 19624 ||||||||||||||||||||| |||||| | | ||| |||| || | || Sbjct 4446 ATGGATTAGATTTTGATTTAGAGAATGGTTTATTCAATGATAAAAACATTGCATTGGCAC 4387 Query 19625 TTTCTGTTGTTAAGTCTAAATATCCCAACTGTAAT-ATTTCTCTTACACTACCAACAATG 19683 | ||||| || |||||| |||| ||| | ||| | | ||||| |||||| Sbjct 4386 TAAAAACCGTTAAATCAAAATAT-CCAAATGTTGTAATTAGTTTGACACTTCCAACATCA 4328 Query 19684 CCAACCGGTTTGACAACTG---TTGGGTTAAAAATTGTCTCAANNNNNNNNNNNNNNNNN 19740 ||||| ||||| ||||| || || | | ||| | Sbjct 4327 CCAACTGGTTT---AACTGAGAAGGGTTTGAGTAGTGTAGAAGCATTTAGTGAACAAGGA 4271 Query 19741 NNNNATTTTGTGGTCAACGGTATGGCTATGGATTATTATTCTCCAGAAGCAGCATTA-GA 19799 |||| | || || |||||||| |||||||||||| || |||| | || | | Sbjct 4270 TTTGATTTCATTGTTAATGGTATGGCAATGGATTATTATAGTCAAGAA-TGGAATGATAA 4212 Query 19800 TATGGGTAAAGCTGCAATTGAAGCTGCAAAAAGTATAGCATCTCAACTAGCCAAAGTGTA 19859 |||||| | ||| ||| |||| ||| |||||| | |||| || || | || Sbjct 4211 AATGGGTGAGGCTTCAAACCTAGCTTCAACAAGTATCAAAGATCAATTAAAAGAATTTTA 4152 Query 19860 CCC------GTATGAACCTTTTATATATTCTAAGGTAGGAATAACACCTATGATTGGTCT 19913 || | ||| || ||| | || || | | | || || ||||||||| | Sbjct 4151 TCCATCATTGAGTGATTCTCAATTATTCGCAAAAGTTGCAGTCACTCCAATGATTGGTTT 4092 Query 19914 TAACGATGATTTGTCAATGTTTAAATTAAAAGATGCTGTTCTTTTAGGATCATTCCAAAA 19973 || |||||||| || | |||| | ||||||||| | | | | ||||| || Sbjct 4091 AAATGATGATTTAAGTATCTATAAAATTGAAGATGCTGCTATAACAAGTTCATTTGCTAA 4032 Query 19974 ATTAAATTTTATGGGTTT---------TTGGTCCTTTAATCGAGATAACCCATCATCTTT 20024 || |||| |||||||| ||| |||||||| ||||| |||||||| || Sbjct 4031 ATCAAATGGAATGGGTTTCATTTCATCATGGGATTTTAATCGTGATAATCCATCATCATT 3972 Query 20025 GGGGCATGTTGACTTACAAACAAGCAGTAATCCAGAACAAAAAGAAAGTGGAGAGTATAC 20084 || ||||||| ||| ||| |||||| | ||||||||| ||| || ||| | Sbjct 3971 TGGATATGTTGATTTAACAACTTCTTCAAATCCAAATCAAAAAGAATCTGGTGAATATTC 3912 Query 20085 TATGACTTTTGTTAAA 20100 | || ||| ||||| Sbjct 3911 AAAAACATTT-TTAAA 3897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658377596345560