Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq316 163 3e-35 seq2826 147 2e-30 >seq316 Length=22015 Score = 163 bits (180), Expect = 3e-35 Identities = 185/248 (75%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| |||||||||||||||| || || || | ||||||||||| ||||||||||| Sbjct 20785 ACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAA 20726 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||| ||||| | ||||| ||||| ||||| || || ||| ||| ||| || || Sbjct 20725 ACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAAA 20666 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCA---TAACTAGCATCATTATT 19136 |||||| || ||||||||||| ||||| | | |||| || || | | |||||| Sbjct 20665 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATTTGAATCATT--- 20609 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 ||||||| | | |||||| || ||||||||||| |||||||| ||||| || || | Sbjct 20608 ---AATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGC 20552 Query 19197 ATTAAATA 19204 |||||||| Sbjct 20551 ATTAAATA 20544 Score = 113 bits (124), Expect = 5e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| ||||| |||||||| || || || ||||| || || |||||||||||||||| | Sbjct 20390 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 20331 Query 19319 TCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 | ||||||||| ||| |||||| | | |||||||||||| || |||||| || Sbjct 20330 TTTGTACTTCAG-ACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATCAGATGCA 20272 Query 19378 GCAAAAAATGCTAATACATGT 19398 ||||||||||| || |||||| Sbjct 20271 GCAAAAAATGCCAAAACATGT 20251 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||||||||||||| |||| ||||| |||||| || ||||||| |||||||||| | Sbjct 20065 GCTTTTTTATACATTCTCCAGATATCTTGATATTTAATTGGAAATAATACAAATCTATCT 20006 Query 19552 TTATTTTCTTTAAGAATAGGTTC 19574 ||||||||||||||||| ||||| Sbjct 20005 TTATTTTCTTTAAGAATTGGTTC 19983 >seq2826 Length=2534 Score = 147 bits (162), Expect = 2e-30 Identities = 415/632 (66%), Gaps = 4/632 (1%) Strand=Plus/Plus Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 ||| || ||||| | | ||||||||| ||| | || || | |||||| ||||| Sbjct 1487 TTCGTTTGGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATC 1546 Query 48224 TGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282 | ||| || || ||| |||| ||| |||| ||| | || || |||||| | || Sbjct 1547 ACTAACCCAGAGGGC-ATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTTT 1605 Query 48283 TTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA 48342 | || || || | ||| || | | ||| ||||||||||| || || |||| || | Sbjct 1606 TCTTGAGATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGG 1665 Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402 |||| || ||| ||| |||||||| | || | || |||| || |||| | | Sbjct 1666 CACCCTTTCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAA 1725 Query 48403 ACATTGGGACAATACCATTTGATA-TACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 |||||| || | |||||| | || | |||||||| || |||||||||| | || Sbjct 1726 GCATTGGTACCAAACCATT-GCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGCA 1784 Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 | || ||| | | || ||| |||||||| || | || || || | ||||| || Sbjct 1785 CGAATTTTATGTACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGT 1844 Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || | ||| ||||| || || || || ||| || |||| | | | ||||| | Sbjct 1845 TTCAAGGTGTCATAGATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACATGAA 1904 Query 48582 GACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT 48641 |||||||| || | || || | || ||||||||||| | ||||| | || | Sbjct 1905 GACATTTGTGGTGAAGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAATAGT 1964 Query 48642 TTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCT 48701 ||||| |||| | ||| || | || |||| || || ||| ||| ||||| Sbjct 1965 TTCTCCGATAGACGTCGATAGGTGTTGATCGCAGACTCAATGTCCTCGCCATGGATACCA 2024 Query 48702 ATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAA 48761 || || |||||||| ||||||| ||| || | || |||||||| | || | Sbjct 2025 ATGGAAACACGCATCAACATATGTTGTGGACGCTCTACAATTTTACCACCAATACGATGA 2084 Query 48762 AGATATGATTTTTCCAATGTTTTAAAACCAAA 48793 || ||||| ||||||||||| || ||||| Sbjct 2085 AGGTATGAACGCTCCAATGTTTTGAACCCAAA 2116 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || ||||| || | ||||| || | |||| || || | ||| |||||||||||| Sbjct 264 TCAACAGTGAATTGAATTGCATCAGCAGCTGGACGAGTACGAAGATAGTACATACCAGTC 323 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 ||||||||| |||| ||| || ||||| || | ||| | | | | ||||| Sbjct 324 TTTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAGGTGAGTTTGGCAAAGGTTGGTTCA 383 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | || || || | | |||||| |||||||| || ||||| | |||||| |||||| Sbjct 384 GCGATGAAAACGTTGAAACTTTGACTTTGATCAATGAAAGCACCACGATCAGCGGCCATA 443 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 || | | | ||||| | || ||||| || |||||||| | || ||| | || ||| Sbjct 444 TCAATGAGAGTTCTTTGACGAATTTCCCAAACGGTTTTATAGAGTTCTTTCAATTCATCT 503 Query 47217 GG 47218 || Sbjct 504 GG 505 Score = 86.0 bits (94), Expect = 7e-12 Identities = 165/238 (69%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 48933 GTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGA 48992 |||| ||||||||||||||||| | ||| | || || |||||| |||| ||||||||| Sbjct 2283 GTTTGTTTATGAAGATTAGATACACTTATACGTGCTGCCAATATACCATAGTCTGGATGA 2342 Query 48993 ATTGTTGTACATGTA--CTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTA 49050 ||||| |||| || || | | | || || ||||| |||| ||||| | || | | Sbjct 2343 CGTGTTG-ACATATAGGCT-GCTGTCTCGGCCGCTAAATTATCCAATTCCGTTGTTTTCA 2400 Query 49051 CACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTTACTGGATC-----TATATG 49105 | |||| | ||| || || |||||| ||||| | |||||||| ||| || Sbjct 2401 CTCCTGGAAATACACCACTAACAACTTTTTGTGCTACCTCCACTGGATCAACTATATCTG 2460 Query 49106 A--TCCATATCCAGTCCATA--ACATAAtttttttATTCTAGATGTAATTTTATCAAA 49159 | | || | ||||| |||||| | ||||| ||||||||||||||||| Sbjct 2461 AATTTAATTTTGGCTCCATTTCACATAAAAATGAAATTCTTGATGTAATTTTATCAAA 2518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562086940994040