Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq316 196 6e-45 seq339 96.9 4e-15 >seq316 Length=22015 Score = 196 bits (216), Expect = 6e-45 Identities = 217/287 (76%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| |||||||||||||||||||||||||| | ||||||||||| ||||| ||||| Sbjct 20785 ACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAA 20726 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 ||||||||||||||||| ||||| | |||||| |||| |||| ||| || || Sbjct 20725 ACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAAA 20666 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 ||||| ||||||||||||||||| || | || || | | || |||| | ||||| Sbjct 20665 TATACCCTCAACTGCTGCAAATGCAACCAAAC--GTTCTGCAA-ATGAATTTGAATCATT 20609 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 ||||||| || || ||| |||||||| |||||||||| ||||||||||||||| || Sbjct 20608 AATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGCATT 20549 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 || | | ||| || ||||| | |||||||| ||||||| Sbjct 20548 AAATAATTTATCTTTAGTTTGTTTATCTTTAATATAAGTTTCAATTA 20502 Score = 105 bits (116), Expect = 8e-18 Identities = 163/231 (71%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 37445 TATATAAGTATCAATT-AGTAAACT-----ATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||||| ||| |||| | |||||| ||| ||||||| || ||||||||||| || Sbjct 20425 TATATATATATAAATTTAATAAACTTACCTATAGGTTTCAGAATGTATATTTTCAATTGC 20366 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 || ||||||||||| ||||| || ||||| | | ||| || || | ||| || | Sbjct 20365 AATTTGAAAACCATAGAAACATCTTGCTTCTGGAATTTGTACTTCAGACATAAATCTAGT 20306 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 || | ||||||||||| || |||||| || ||||| || || | ||||| | || Sbjct 20305 TGCAAGATTTTCATTAACAATACCATCAGATGCAGCAAAAAATGCCAAAACATGTGAGAT 20246 Query 37619 AAAATGTCTTTCATCATTTGATAATTT---TTTCCAATCATTAATATCTTT 37666 || || | ||||| || || || ||| || ||||||| | |||| || Sbjct 20245 GAAGTGACGTTCATTATCTGTTAGTTTATATTCCCAATCAACATTATCATT 20195 >seq339 Length=20847 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 78230 TGATGTTATTGGAATTGATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAA 78289 |||||| ||||| |||||||||||||||||||| || | || ||||| |||| | Sbjct 16061 TGATGTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGA 16120 Query 78290 TATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAA 78349 | | |||||| |||| |||| |||||| || | ||| | |||| ||||| |||||||| Sbjct 16121 TTTAGCAAATCAAGGTAAAACCGTTATTATTGCCGCACTCGATGGTACATTCCAAAGAAA 16180 Query 78350 AACATT 78355 | |||| Sbjct 16181 ACCATT 16186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592293766280440