Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq312 80.6 7e-11 >seq312 Length=22109 Score = 80.6 bits (88), Expect = 7e-11 Identities = 128/178 (72%), Gaps = 12/178 (7%) Strand=Plus/Minus Query 972 TATGGTAGAATAGCTCCTAGGTCCGGATTAGC--GGCTAAGTTTATGATTGA-TGTGGGT 1028 ||||||||||| || || || || || ||||| || || ||| ||||| ||||| | Sbjct 9208 TATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGAAAAATTTC--ATTGACTGTGG-T 9152 Query 1029 GCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTA---ATTTT 1085 ||||||||||| || | || | ||| || || |||||||| |||||||| | ||| Sbjct 9151 GCTGGTGTTATCGACTCTGATTATAGAGGTAATGTTGGTGTCGTTTTATTCAACCATTCA 9092 Query 1086 AGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGAAA 1143 | | | | ||||| ||| | | |||||||| || ||||| ||||| | ||||| Sbjct 9091 AATGTTGA---TTTTCCAATTGCTATTGGTGATAGAATCGCTCAATTAATCTTTGAAA 9037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138676476668316