Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq268 107 1e-18 seq1461 98.7 8e-16 seq140 84.2 2e-11 >seq268 Length=24546 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || || || ||||||||||||||||| |||| | | ||| | || Sbjct 17394 AAAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCTGATAAAGTACGACCATCT 17453 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 ||||| || ||||| ||||| || | || |||||||| | |||| || ||||| | Sbjct 17454 TCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATTT 17513 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||| ||| ||||||| | | | ||||| | || || || | || || ||| Sbjct 17514 TGAATTTTTGCTTTTACATTTTCAATATTATCTGAACCTTCAACTTCAAGAGTTATGGTT 17573 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || |||||||| |||||||| ||||| Sbjct 17574 TTTCCAGTTAAAGTTTTAACAAAAATTTGCAT 17605 >seq1461 Length=5937 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| || |||||||| ||||||||||| ||| | ||| | || ||| Sbjct 3646 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCTTCC 3587 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || || || || ||||| || | || | || ||||| || | Sbjct 3586 AATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGA 3527 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | | || || | || || || | ||||| |||||| Sbjct 3526 ATTTTGGTTTTTACATTTTCAATATTGTCGGAACCTTCTACTTCGAGAGTAATTGTTTTT 3467 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| |||||||| ||||| Sbjct 3466 CCAGTAAGAGTTTTAACAAAAATTTGCAT 3438 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| || |||||||| ||||||||||| ||| | ||| | || ||| Sbjct 4330 ACTAAATGGAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCTTCC 4271 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || |||| || ||||| || | || | || || ||||| | Sbjct 4270 AATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGA 4211 Query 48678 ATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || ||||||||| ||| | | | ||||| |||| || || | || || || || Sbjct 4210 AT-TTTTGTTTTAACATTTTCAATATTATCTGAGCCCTCAACTTCAAGAGTGATGGTCTT 4152 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| ||||| || ||||| Sbjct 4151 ACCAGTTAATGTTTTAACAAAGATTTGCAT 4122 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || || ||||| |||||||||||||| ||| | ||| | || || Sbjct 4786 ACTAAATGGAGAGTTGATTCCTTTTGGATATTGTAATCAGAAAGAGTACGACCATCTTCT 4727 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| || || || |||||||| | || | || |||||||| | Sbjct 4726 AATTGTTTACCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGA 4667 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCACCTCCACCGTAATCGTTT 48735 |||||| |||||| | || | | | || | || || || | ||||| || | Sbjct 4666 ATCTTTGTCTTTACA-TTCTCA-ATGTTGTCACTACCTTCAACTTCGAGAGTAATGGTCT 4609 Query 48736 TTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || || | |||||| ||||| || ||||| Sbjct 4608 TACCAGTAAGAGTTTTAACAAAGATTTGCAT 4578 >seq140 Length=35707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || || || || ||| |||||||| || ||||||||||| ||| | ||| | || || Sbjct 25340 ACTAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCT 25399 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || || | || |||||||| | || | || || || || Sbjct 25400 AATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGG 25459 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||||||| | | | || || |||| ||||| | || || ||||| Sbjct 25460 ATCTTGGCTTTTACATTTTCGATATTATCAGAACCCTCAACCTCTAAGGTGATTGTTTTA 25519 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| |||||||| ||||| Sbjct 25520 CCAGTTAAGGTTTTAACAAAAATTTGCAT 25548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380923156631853