Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1327 178 3e-39 >seq1327 Length=6411 Score = 178 bits (196), Expect = 3e-39 Identities = 333/485 (69%), Gaps = 11/485 (2%) Strand=Plus/Plus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGAT 150366 ||| |||||| | |||||| | |||||| | || |||| || | | | ||| ||| Sbjct 3776 AGAGGGTAAATTAGATCCAGTCATTGGTAGAGATGATGAAATTCGTCGTGTCATT-AGAG 3834 Query 150367 T-CTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425 | || || | | ||||||||| || | |||| ||||||| |||||||||||||||| Sbjct 3835 TACTCTCAAGAAGAACCAAAAACAACCCAGTGTTAATTGGTGAGCCAGGTGTTGGTAAAA 3894 Query 150426 CACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGA 150485 || | ||||||| || ||||||||||| || | | ||||||| |||| ||| | ||| Sbjct 3895 CAGCAGTCGTTGAAGGTTTAGCACAACGTATTGTTCGTGGTGATATTCCTGATAATTTGA 3954 Query 150486 AAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTG 150545 | | || | || | ||| |||||||||| | | ||||||| |||| ||||||| Sbjct 3955 ATGCACGTG---TCATTGCATTGGATATGGGTGCTCTCATTGCTGGTGCTAAATATCGTG 4011 Query 150546 GTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGA---ACGCGATGATG 150602 |||| || ||||||||| || | | | || | ||| | || || | | || | Sbjct 4012 GTGACTTTGAAGAACGTTTAAAAGCTGTCCTCAAGGAAGTTAAGGATTCAAATGGTGGTA 4071 Query 150603 TTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTT 150662 | ||||| ||||| |||||||| ||| | ||||||| ||| || || ||| Sbjct 4072 TCATTCTATTCATTGATGAAATTCATTTGGTATTGGGTGCCGGTAAAAC---CGATGGTG 4128 Query 150663 CTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCG 150722 | ||||| || | || ||||| | | | |||||| ||||| || | Sbjct 4129 CAATGGATGCTGCAAACTTATTGAAACCAATGTTGGCAAGAGGTGAACTTCGTTGTATTG 4188 Query 150723 GTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTC 150782 |||| ||||||| ||||| |||||| || || ||||||| ||| |||| | | |||| Sbjct 4189 GTGCTACAACCTTGGATGAGTATCGTCAATACGTTGAAAAGGATCCAGCTTTTGAACGTC 4248 Query 150783 GTTTC 150787 ||||| Sbjct 4249 GTTTC 4253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147544657405278