Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq89 127 2e-24 seq52 114 1e-20 seq268 109 5e-19 seq140 107 2e-18 seq64 107 2e-18 seq356 100 2e-16 seq1461 89.7 4e-13 seq183 87.8 2e-12 >seq89 Length=43963 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| || || ||||| ||||| ||||||||||| || |||| ||| | Sbjct 14107 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14166 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| | | | | |||| || || | || |||||||| || | || ||| Sbjct 14167 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAA-GACAAAGAAGGTATCCCACCAGA 14225 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | ||||||||||| || |||||||| |||||| | ||| | ||||||| Sbjct 14226 TCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTA 14285 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| ||||| ||||| || || ||| | || ||||||||| |||| || || Sbjct 14286 TAACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGGTAT 14339 >seq52 Length=54870 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||||||||| ||||||||||||||| ||| ||| | Sbjct 45235 AATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAG 45294 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || | | | || | || || |||| || || ||||| || | || ||| | Sbjct 45295 TGATAACATTGAAAATGTAAAAGCTAAAATTCAA-GATAAAGAAGGTATTCCACCAGACC 45353 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 |||| | || || || || || ||||||||||||||| | ||| | | ||||||| Sbjct 45354 AACAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTATA 45413 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || ||||||||||| ||||| || |||| ||||||||| |||| || || Sbjct 45414 ATATCCAAAAAGAATCCACTCTCCATTTGGTTTTAAGATTAAGAGGTGGTAT 45465 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAA--CCTT 28611 |||||||| ||||| ||||| ||||| |||||||| |||||| || ||| | | Sbjct 46148 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACAATTACCTTGGAGGTTGAAGGCAGT 46207 Query 28612 CAGAGACGGTGGCCGATC-TCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 | | || || || | |||| || ||| || ||||| || | || |||| Sbjct 46208 GATA-ACATTGA--GAACGTCAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGAT 46264 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| | ||||| || || || ||||||||||||||| | ||| | | || ||| Sbjct 46265 CAACAACGTCTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGACTAT 46324 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| ||||| ||||| ||||| || |||| ||||||||| |||| || Sbjct 46325 AACATCCAAAAGGAATCCACTCTCCATTTGGTTTTAAGATTAAGAGGTGG 46374 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| ||||| |||||||| ||||| ||| ||| | Sbjct 45920 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACAATTACATTGGAAGTTGAAGGTAGT 45979 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | | |||| || || | || || ||||| || | || |||||| Sbjct 45980 GATAACATTGAGAACGTCAAAGCCAAGATTCAA-GATAAAGAAGGTATCCCACCAGATCA 46038 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | ||||| || || || |||||||| |||||| | ||| | |||| ||||| Sbjct 46039 ACAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTATAA 46098 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| ||||||||||| ||||| ||| | || | |||||| |||| || || Sbjct 46099 CATCCAAAAAGAATCCACTCTCCACTTAGTTCTTAGATTAAGAGGTGGTAT 46149 >seq268 Length=24546 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 |||||||||||| ||||| ||||| ||||| || |||||||| || ||| ||| Sbjct 17609 AAAAATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACCATAACTCTTGAAGTTGAAGG 17550 Query 28610 TTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 |||||| | | | || | || ||||||| || | || || ||| | || || Sbjct 17549 TTCAGATAATATTGAAAATGTAAAAGCAAAAATTCAAA-ATAAGGAAGGAATTCCTCCAG 17491 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 ||||||| ||| | |||||||| || ||||||||||||||| | ||| | | |||| Sbjct 17490 ATCAACAAAGATTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCAGATT 17431 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | || |||||||| ||||| || || || | || |||||| | || || || Sbjct 17430 ACAATATTCAAAAGGAATCAACACTTCATTTAGTTTTAAGACTTCGTGGTGG 17379 >seq140 Length=35707 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| ||||| |||||||| ||||| ||| ||| | Sbjct 25320 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACAATTACACTTGAAGTTGAAGGTAGT 25261 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || |||| |||||| |||||||| || | || ||| ||| Sbjct 25260 GACAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAA 25201 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| || |||||||| |||||| | ||| | | ||||||||| Sbjct 25200 CAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTATAAC 25141 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||| ||||| ||||| || | || | |||||| |||| || Sbjct 25140 ATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGAGGTGG 25094 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| ||||| |||||||| || || ||| ||| ||| Sbjct 25776 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACAATCACATTGGAAGTTGAAGGTTCT 25717 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || |||| |||||| |||||||| || | || ||| ||| Sbjct 25716 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAA 25657 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || || || || ||||||||||||||| | ||| | | ||||| ||| Sbjct 25656 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 25597 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| ||||| ||| | || | |||||| |||| || || Sbjct 25596 ATCCAAAAAGAATCCACTCTCCACTTAGTTCTTAGATTAAGAGGTGGTAT 25547 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || |||||||| || || ||| ||| ||| Sbjct 26004 ATGCAAATCTTCGTTAAAACTCTCACTGGTAAAACAATCACATTAGAAGTCGAAGGTTCC 25945 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || |||| |||||| |||||||| || | || ||| ||| Sbjct 25944 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAA 25885 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| || |||||||| |||||| | ||| | | ||||||||| Sbjct 25884 CAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTATAAC 25825 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||||||||| || | || | |||||| |||| || || Sbjct 25824 ATTCAAAAGGAATCTACTCTCCATTTAGTTCTTAGATTAAGAGGTGGTAT 25775 >seq64 Length=50952 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| ||||| |||||||| ||||| ||| ||| | Sbjct 24510 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACAATTACTTTGGAAGTTGAAGGTAGT 24451 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | || | || || |||| || || ||||| || | || |||||| Sbjct 24450 GATAACATTGAAAATGTAAAAGCCAAAATTCAA-GATAAAGAAGGTATTCCACCAGATCA 24392 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || |||||||| || |||||||| |||||| | ||| | | || ||||| Sbjct 24391 ACAACGTCTCATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTATAA 24332 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||||||| ||||| || | || ||||||||| |||| || || Sbjct 24331 CATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGGTAT 24281 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 ||||||| ||| | || || || || |||||||| |||||| | ||| | | || | Sbjct 24623 ATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACT 24564 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||||||||||| ||||| || | || ||||||||| |||| || || Sbjct 24563 ATAACATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGGTAT 24509 >seq356 Length=19801 Score = 100 bits (110), Expect = 2e-16 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 28543 ATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAA 28602 ||| | |||| |||||||| ||||| ||||| | || ||||||||||| || ||| Sbjct 11824 ATTTTTTAAATATGCAAATTTTTGTTAAAACTCTTACAGGTAAAACCATCACTTTAGAAG 11765 Query 28603 CGGAACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTG 28661 ||| ||| || | | | || | || || |||| || || ||||| || | Sbjct 11764 TTGAAGGTTCTGATAACATTGAAAATGTTAAAGCTAAAATTCAA-GATAAAGAAGGTATT 11706 Query 28662 CCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATG 28721 || ||| ||||| ||| | || || || || |||||||| |||||| | || | Sbjct 11705 CCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACCTTA 11646 Query 28722 GCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGG 28781 | ||||||||||||||||||||||| ||||| ||| | || | |||||| |||| || Sbjct 11645 TCAGATTATAACATTCAAAAAGAATCCACTCTCCACTTAGTTCTTAGATTAAGAGGTGGT 11586 Query 28782 AT 28783 || Sbjct 11585 AT 11584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || |||||||| ||||| ||| ||| | Sbjct 11585 ATGCAAATTTTTGTTAAAACTCTTACAGGTAAAACAATTACATTGGAAGTTGAAGGTAGC 11526 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | || | || ||||| | || || ||||| || | || |||||| Sbjct 11525 GATAACATTGAAAATGTTAAAGCAAAGATTCAA-GATAAAGAAGGTATTCCACCAGATCA 11467 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || || || || |||||||| |||||| | ||| | | ||||| || Sbjct 11466 ACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAA 11407 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| ||||| || | || ||||||||| |||| || || Sbjct 11406 TATCCAAAAAGAATCCACTCTTCATTTAGTTTTAAGATTAAGAGGTGGTAT 11356 >seq1461 Length=5937 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || |||||||| ||||| |||| ||| | Sbjct 3894 ATGCAAATCTTTGTTAAAACCCTTACTGGTAAAACTATTACTCTCGAAGTTGAAGGTAGT 3953 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || | ||| ||| || || || || || | || ||||||| Sbjct 3954 GACAACATTGAGAATGTAAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCAGATCAA 4013 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || | || || || || || |||||||| |||||| || | | ||| ||||||| | Sbjct 4014 CAACGTCTCATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACATTAT--CCGATTACA 4071 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || ||||||||||| ||||| ||| ||||| | |||||| |||| || || Sbjct 4072 ATATCCAAAAAGAATCCACTCTTCACTTGGTACTTAGATTAAGAGGTGGTAT 4123 >seq183 Length=30623 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| || ||||| || | || ||||||||| ||| | |||||||| || ||| Sbjct 20405 AAAATCCAAGATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATCTTTGCCGGTAAA 20464 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||| | || | | ||||| || || ||||||||||| ||||| ||| Sbjct 20465 CAATTAGAAGACGGTCGTACCCTCTCTGATTACAATATCCAAAAAGAATCAACTCTCCAC 20524 Query 28758 ATGGTATTAAGATTACGAGGAGG 28780 | || ||||||||| |||| || Sbjct 20525 TTAGTCTTAAGATTAAGAGGTGG 20547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425388670644069