Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2406 241 1e-58 >seq2406 Length=3387 Score = 241 bits (266), Expect = 1e-58 Identities = 475/693 (69%), Gaps = 20/693 (3%) Strand=Plus/Minus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 ||||| | |||||| || || | ||| ||||| | || ||||| ||||| |||||| Sbjct 2587 AATGGAGCGAGATGGGTTTTAACGCAAATTGGACCCATACCTGGACCACCACCACCATGT 2528 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 ||||||||||| || ||||| | ||||| |||||| || || |||||| |||| ||| Sbjct 2527 GGAATACAGAAAGTTTTATGAAGATTTAAATGACAAACGTCGGCACCAATATCACCTGGA 2468 Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341 ||||| || || || || | |||||| ||||| | ||| || |||||||||||| Sbjct 2467 CGACAAAGACCAACTTGAGCGTTCATATTTGCGCCATCCATATAGACTTGACCACCATTG 2408 Query 138342 TCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGA 138401 | |||| ||| | ||| || | | || |||||||||||||||||| |||||| Sbjct 2407 TTGTGAATGATGTCACAGATATCTTTGGCACCCTCTTCAAATACACCATGAGTTGATGGA 2348 Query 138402 TATGTAATCATAATACATGAGAGTTCAA-ATGTATTCATGAT----TGCTTTCTTCTCTA 138456 || || ||||| | ||| | ||| | | || ||| | |||||| || | Sbjct 2347 TAAGTGATCATGA-----GAGCGGCCAAGGTATCTTTATGTTTTTCTGCTTTTGCCTTGA 2293 Query 138457 GATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTG 138516 ||||| | || || || |||| |||||| | |||| | || |||||||| || Sbjct 2292 GATCTGCTACATCGATATTACCATTGGAATCACAATCGACAACCACTACTTTCATACCAA 2233 Query 138517 CCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTC 138576 |||| ||||||| |||||||| || ||||| || ||| |||| || ||||| ||||||| Sbjct 2232 CCATTGCTGCACTTGCAGGATTGGTACCATGAGCAGACACTGGAATGAGACAAACATTTC 2173 Query 138577 TTT---TATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACT 138633 ||| | | | | ||| ||| |||| | | || | | | |||||||||| Sbjct 2172 TTTGACTTTGACCAATTGA--AGTGA-GATAGGAACGAATAACCATTAAACCTGCATACT 2116 Query 138634 CACCCTGTGATCCTGCGTTAGGTTGTAATGATATAG-AATCAAAACCTGTGATATCACAT 138692 |||| || || || || || ||||||||||| | || ||| |||||||| | |||||| Sbjct 2115 CACCTTGAGAGCCAGCATTTGGTTGTAATGA-ACAGCCATCGAAACCTGTCACCTCACAT 2057 Query 138693 AACCATTTCTGTAAGT-CATCTATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGT 138751 || ||| | || | | ||| | || | | || |||| | || | ||| Sbjct 2056 AA-CATATTTGAGATTGAATCAAACATTTCCTTGTAGCCCAATGATTGATTGGATGGTAC 1998 Query 138752 ATGTGGATGCACGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATT 138811 | |||||| | | ||| ||| |||||| || || || ||| | | ||||| Sbjct 1997 AAATGGATGGATAGAGTTAAACTCTGGCCATGAAACTGGATACATTTCAGTGGTGGCATT 1938 Query 138812 TAGTTTCATTGTGCAACTACCAAGTGGAACCAT 138844 || |||||| ||||||||||| | ||||| ||| Sbjct 1937 TAATTTCATAGTGCAACTACCCAATGGAATCAT 1905 Score = 127 bits (140), Expect = 2e-24 Identities = 199/282 (71%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 139858 GCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATC 139917 ||||||||||||| || || || || ||||| |||| ||||| ||||| ||| | | | Sbjct 852 GCATTGCCTCTGCGGCGGCTGTAGCCTCATCCAATAATGATGCATTTGCCATTTGAAGAC 793 Query 139918 CTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATA 139977 |||||| |||| | | |||||| |||| |||||| || || | || ||| | Sbjct 792 CTGTAAACTCTGATACCATGGTTTGGAAATTCAATAAACTCTCTAAACGACCTTGACTAA 733 Query 139978 TCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCT 140037 |||| |||||||| || || || | ||| ||||||| |||||||| | || || || | Sbjct 732 TCTCTGCTTGATATGGTGTATAGGGTGTATACCAACCTGGATTCTCCAAAATATTACGTT 673 Query 140038 GTATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT-AAGACTAGGTTTTACT 140096 | || || | ||||||||||| ||||| || || ||| || || | | | ||| Sbjct 672 GAATCACATGTGGTGTAATGGTACCATAATAGCCCATACCAATGAATGATCTG-TAAACT 614 Query 140097 TTGTTTGCTTTTGCTATATTTTTTAACTCTGCCAATGCTTGA 140138 ||||| || ||| || ||||| || ||| |||| |||| Sbjct 613 TTGTTCTTTTCTGCAATCTTTTTCAAATCTTTCAATAATTGA 572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578975884199720