Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1364 268 1e-66 >seq1364 Length=6249 Score = 268 bits (296), Expect = 1e-66 Identities = 400/560 (71%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 47752 GATTCCTCAACAAACTGACGGACAGAATATTGATTT---CCTGTGGCAATAACAAAATCA 47808 |||| |||||||| | ||| ||||| | || || || ||||| ||||| ||||| Sbjct 4545 GATTTTTCAACAAATTCACGAACAGAGT---GAGTTTCACCAGTGGCGATAACGAAATCC 4601 Query 47809 TCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCC 47868 || |||| |||||||| | |||||||||||| ||||||||||||||||| ||||| ||| Sbjct 4602 TCTGGTTTCTCTTGTTGTAACATTAACCACATTGCCTCGACATAATCTCTAGCATGACCC 4661 Query 47869 CAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATT 47928 || ||||| |||| | ||| || | || | | || | ||||| || | | Sbjct 4662 CAATCACGTTTAGCATTGATATTACCCAAGTAGAGAATTTCATCTTTACCA-CATGCAAT 4720 Query 47929 GCTTTTAATGCT-CTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTC 47987 | || | | || ||||| | ||||||||||||| ||| | | ||| ||||| Sbjct 4721 ACCAGCAACGAAACGAGTGATCTTTCTAGTTACAAAAGTTGGACCTCTACGTGGTGATTC 4780 Query 47988 ATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTAC 48047 |||||| || | |||||| | || |||||||| |||||| |||||||||||| || Sbjct 4781 ATGATTGAACAAGATACCATTGCATGCATACATATCGTATGCTTCACGATAGTTTACAAC 4840 Query 48048 TATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGT 48107 ||||| || | || |||||||||| | || || |||||||||||||| |||||||| Sbjct 4841 GATCCAATAGGCGTATTGTTTTGCAACGGCGTATGGTGAACGTGGATAGAATGGTGTGGT 4900 Query 48108 CTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGAT 48167 ||||| |||||| ||||||| || |||||||| |||||| ||| |||||||| || || Sbjct 4901 CTCTGATTGTGGAATCTCTTGAACTTTACCATAGAGTTCAGAGGTTGATGCTTGGTA-AT 4959 Query 48168 ACGAACCCTATCTTCCATCTCAAGCAA--ACGGACTGCCTCAAGCACTCTCAGGGTGCCT 48225 | | ||| | | | || | ||| ||| | ||| || | | | || ||| Sbjct 4960 ATTTAACCTTTTTCTCTAATCCA-CAACTACGAATTGCATCCAATAAACGAAGACATCCT 5018 Query 48226 ATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGT 48285 | |||| | |||||||||||| | ||| ||||| || || || |||||||| ||| Sbjct 5019 AATCCATCAACATCACCAGTATACTCTGACATATCAAATGATACTTTAACATGACTTTGT 5078 Query 48286 GCCCCAAGATTATAAATCTC 48305 || || | |||||| || || Sbjct 5079 GCTCCTAAATTATATATTTC 5098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665468520586520