Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2826 232 8e-56 seq1790 95.1 1e-14 seq117 91.5 2e-13 >seq2826 Length=2534 Score = 232 bits (256), Expect = 8e-56 Identities = 1135/1771 (64%), Gaps = 70/1771 (4%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 ||||| | ||||| ||||| || | || || ||||| || || |||||||| |||| Sbjct 2053 CCACAACATATGTTGATGCGTGTTTCCATTGGTATCCATGGCGAGGACATTGAGTCTGCG 1994 Query 75272 TTGGAGACATA-CGACAAGATGTC---CCAAGGTA-TGTTCATTCACGCAACACCAACCC 75326 | | || || |||| ||| | || | | |||| || || |||||||| Sbjct 1993 ATCAACACCTATCGAC-----GTCTATCGGAGAAACTATTCACACATGCCACACCAACAT 1939 Query 75327 TCTTCAATGCTGGTACACCAAGACCGCAGATGTC--CA-GTTGCTTCCTTATCGCCAAC- 75382 | ||||| ||||||||||| ||| || ||||| || ||| ||| || | || Sbjct 1938 TATTCAACGCTGGTACACCTTCACCACAAATGTCTTCATGTTTCTTGGTT----CAAATG 1883 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 |||||||| |||||| | |||||||||| || | | | ||||| || |||||| Sbjct 1882 AAGGAGGATTCAATCGATGGTATCTATGACACCTTGAAACAATGTGCATTGATTTCAAAG 1823 Query 75443 TGGGCTGGGGGTATTGG-GATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 75501 | || || |||||||| | ||| | | ||| | | | ||| | || | |||||| Sbjct 1822 AGTGCCGGTGGTATTGGTGTTGC-CGTACATAAAATTCGTGCCGCTCAAAGTTATATTCG 1764 Query 75502 GGGGACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560 || || ||||| | | || ||||| | | ||||||||||| || || || | || | Sbjct 1763 TGGTACCAATGGCACTAGCA-ATGGTTTGGTACCAATGCTTCGTGTTTTCAATGATACCG 1705 Query 75561 CGCGCTATGTAAATCAAGCGGGGCGTCGCAAG---GGGT-CCATCGCGGTCTACTTGGAA 75616 | || || || |||||| | || | | ||| |||| || | || || |||||||| Sbjct 1704 CTCGTTACGTCGATCAAG-GTGGTGGCAAAAGAAAGGGTGCCTTTGCCGTATACTTGGAG 1646 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAACCAAGGTGACGAAGA 75675 ||||||||||||||| || | ||||| | || | | || ||| || | || || Sbjct 1645 CCATGGCATGCCGATGTCTTTGAGTTTATCGATCTCAAGA-AAAACACTGGCAAGGAGGA 1587 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 | | ||||||||| || | |||| ||| || || | || ||| |||| || Sbjct 1586 GATGAGAGCTAGAGATCTATTCTATGCCCTCTGGGTTAGTGATATCTTTATGGAGCGTGT 1527 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGC 75795 || | |||| | ||||| || || |||||| || | ||||| |||||| | || | Sbjct 1526 CGAACAAAATGGTGATTGGTCACTCTTTTGTCCAAACGAAGCACCCGGTCTCGCTGAAAC 1467 Query 75796 GGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAA 75852 | || | ||||||||| |||||||| || | ||| | ||| Sbjct 1466 TCATTCCCAAGAACATCGTGCCCTCTACTTAAAGTATG-AGGCAACACCAGACCTCGCAA 1408 Query 75853 TGCGACTGTA---CCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGAC 75909 || |||| ||| || ||||| || ||| | ||||||| || || Sbjct 1407 GACG--TGTAATCAAAGCACAAGAACTTTGGTTCGCCATTATGGAATCACAAGTTGAAAC 1350 Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969 ||| ||||||| || | || ||||| ||||| || || || ||| | ||| | Sbjct 1349 TGGTACACCATTCATCTTGTATAAGGACGCTTGCAATTCCAAATCCAATCAACAAAATCT 1290 Query 75970 GGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGA 76029 || || || | || ||||||||||| ||||| | | |||||| ||||| Sbjct 1289 CGGTACCATTAGTAGTAGTAATCTTTGCACTGAAATCATTCAATACACATCACCAGATGA 1230 Query 76030 GACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT--AT--GTC-AATGAAGAG 76084 | || ||||||||| | || ||||| ||||||||||| | || ||| || || | | Sbjct 1229 AATTGCAGTTTGCAATCTCGCCTCAATTGCCCTTCCAAAATTCATTCGTCAAAAGACGGG 1170 Query 76085 ---ACTCG---CA----------CTTTTGATTATGAAAAACTTCATGAAATCACAAAGAT 76128 | || || |||||| || || || ||||||||| ||| | Sbjct 1169 TTCAACCGATCCAAAAGAGAAGGAGTTTGATCATCAATTCCTCTTTGAAATCACCAAGTT 1110 Query 76129 TGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCG 76188 | || ||||| ||| ||||||| | || |||||||| || | || Sbjct 1109 GATCACTGTCAATCTCAACGTTATCATTGATCGTAACTTTTATCCTGTGGTCGAGGCTAA 1050 Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 || || ||| | |||| | || |||||| | ||| | |||||| | || ||||| || Sbjct 1049 AACTTCAAATCTTAGACATCGTCCAATTGGTATTGGTATCCAAGGTTTAGCCGATGTTTT 990 Query 76249 TATT-TTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCT 76307 ||| ||| | | | |||||| | || ||| | | |||| | ||| Sbjct 989 CATTCAAATGCGTATGC-CTTTTGATAGTGTTGCCGCCGCTAAATTAAATGTTGAAATCG 931 Query 76308 TTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTT 76367 ||||||||| ||| |||| | || || | ||||||||| | | ||| Sbjct 930 CTGAAACCATCTATTTCGCAGCTTTGACCGCCTCTCATGAATTGGCACTACGTGATGGTC 871 Query 76368 CCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 | |||||| | || | || || || || ||| |||| | ||||| | ||||||| || Sbjct 870 CATATGAGTCTTTCCAAGGCTCACCAGCATCCAAAGGTATCCTTCAATACGATATGT-GG 812 Query 76428 AAGGTGAAACCAAGCTCAACTACG-ACTGGGATGTTCTCAAGGA-ACG--CATCAAGGAG 76483 || |||| ||||| ||| | | | |||| | || || || | | | |||| | Sbjct 811 AAAGTGACTCCAAGTTCACGTTGGAATTGGGCAGACCTAAAAGATAAGATCGTCAATAAA 752 Query 76484 AAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATC 76543 ||| | |||||| || || || |||||||||||||| || || || |||||| Sbjct 751 GGTGGTTTACGTAACTCCCTCTTAATTGCACCAATGCCAACCGCTTCAACTAGTCAAATC 692 Query 76544 TTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTC 76603 | ||||| || |||||||||||||||||||| ||||||| ||| | | | Sbjct 691 CTTGGTAACAACGAATGCTTTGAACCATACACTTCAAACATTTACAGTCGTCGTGTATTG 632 Query 76604 GCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTC 76663 || ||||||||| || ||||| || || | | | || || | | | | ||| | Sbjct 631 GCTGGTGAGTTTACTATCGTCAATAAACAATTGTTGGAGGATCTTATGGAATTGGGTATT 572 Query 76664 TGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCA 76723 ||| | || |||||| ||| || | ||| ||||||| || ||| || Sbjct 571 TGGACACCAGAGATGAAGAATCAAATCATTGCAGCACGTGGTTCAATCCAATCCATTGGT 512 Query 76724 GATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGA- 76782 | || |||||||| | || | ||||| || || |||||||| | ||||| Sbjct 511 GGCATTCCAGATGAATTGAAAGAACTCTATAAAACCGTTTGGGAAAT--TCGTCAAAGAA 454 Query 76783 -TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATC 76841 | ||||||| |||||||| ||||||||| ||||||||||||||||||||| | || Sbjct 453 CTCTCATTGATATGGCCGCTGATCGTGGTGCTTTCATTGATCAAAGTCAAAGTTTCAACG 394 Query 76842 TATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAAC 76901 | ||||| | ||||| | |||| ||| | || ||||| | || | ||||| Sbjct 393 TTTTCATCGCTGAACCAACCTTTGCCAAACTCACCTCAATGCACTTTTATTCTTGGAAGA 334 Query 76902 AGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 | || | || || || ||||||||||| || Sbjct 333 AAGGTTTAAAGACTGGTATGTACTATCTTCG 303 >seq1790 Length=4853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 267/407 (66%), Gaps = 15/407 (4%) Strand=Plus/Plus Query 175192 GATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAG 175251 ||||||| || ||| | || |||| || ||||||| |||| | ||| | ||| Sbjct 1215 GATGTTGCAGGACTTGGTGAAGCAAAAGTAGAGATTGAAGAATTTGTAAACTTTTTAAAG 1274 Query 175252 CAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGT 175311 | || ||| || || | ||| || ||||| || |||| || || | | || Sbjct 1275 AATCCAAAGAAATTCCATGACATTGGAGCAAAGATACCAAGAGGTGCAATTTTAGTTGGA 1334 Query 175312 AAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCA 175371 |||||||| || || || | | ||| ||| | ||| |||||| ||||||| ||| Sbjct 1335 CCACCAGGTACAGGTAAAACATTGATTGCCAAAGCAACCGCAGGTGAAGCAAATGTACCA 1394 Query 175372 TTCAT-----CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 ||| | | |||| | || | || || ||||||||||||||||| ||| | Sbjct 1395 TTCTTTTCAACGAGTGGTT-----CAGATTTCGTAGAGATGTTTGTTGGTGTTGGTCCAT 1449 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTG 175486 | | ||| | ||| | |||||| || | | ||| |||||||||||| ||||||| Sbjct 1450 CACGTGTTAGAGATTTATTTGAACAAGCAAGAAAGAATGCACCATGTATTGTATTCATTG 1509 Query 175487 ATGAGATTGATGCGGTGGGCA-AGCAACGCAGCGCTGGTGGTATGCCAG---CAAATGAC 175542 |||| || ||||| | || | ||||| | | |||||| | | | ||||||| Sbjct 1510 ATGAAATCGATGCAATTGGTAGAGCAA-GAGGTAAAGGTGGTTTCTCTGGTTCAAATGAT 1568 Query 175543 GAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 || | ||| | || | ||||||||| | || |||||||| || Sbjct 1569 GAACGTGAAAACACTCTAAATCAACTATTGGTTGAAATGGATGGTTT 1615 >seq117 Length=39445 Score = 91.5 bits (100), Expect = 2e-13 Identities = 120/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 159113 TTATAAACTTTGGAATGAGTTTCTCCGGGTATTGATTTGGACCATAAACATTATTACAGC 159172 ||||||| ||||| || | || || || ||||| ||||||||||||| |||||| | Sbjct 5962 TTATAAATTTTGGTATAATCTTTTCAGGATATTGTTTTGGACCATAAATATTATTTGCTC 5903 Query 159173 GAATTATT-TTGATATTCATATCAAATGATTCTAT-ATATGAACGGACTATCATTTCGGC 159230 ||||| ||| | | || | |||||||| ||| |||||| | |||| ||| || Sbjct 5902 TGGTTATTATTGTTGGTAAT-TTAAATGATT-TATAATATGATTGAACTAAATGTTCTGC 5845 Query 159231 CGCCGCTTTTGATGCTGAATATGGATTTGTTGGTCTAAGTA 159271 ||||||| ||||||||||||||| |||||| |||||| Sbjct 5844 TCCCGCTTTACTTGCTGAATATGGATTCGTTGGTTTAAGTA 5804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596546400899680