Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1790 194 5e-44 seq2826 163 8e-35 seq847 136 1e-26 seq285 95.1 4e-14 >seq1790 Length=4853 Score = 194 bits (214), Expect = 5e-44 Identities = 342/495 (69%), Gaps = 5/495 (1%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||| || ||||| | | | ||||||| || || ||||||| ||| || || || Sbjct 1705 CTATCGAATCTACCTGGTCTAAGTAATGCTTTATCCAAGATATCGGGTCTATTGGTGGCA 1646 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 ||||| ||||||| | || | | || || |||||||| || | |||||| Sbjct 1645 GCCAAGACAACAACATTTTTCAATGGTTTGAAACCATCCATTTCAACCAATAGTTGATTT 1586 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 || || | ||| | ||||||||||||||| || |||| | | ||| | || Sbjct 1585 AGAGTGTTTTCACGTTCATCATTTGAACCAGAGAAACCACC---TTTACCTCTTGCTCTA 1529 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||| ||||| |||||||| | | ||| || | ||| | ||| || | || Sbjct 1528 CCAATTGCATCGATTTCATCAATGAATACAATACATGGTGCATTCTTTCTTGCTTGTTCA 1469 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| ||||| ||||| |||| |||| ||||||| |||| ||||| || || ||| | Sbjct 1468 AATAAATCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATCTGAA-CC 1410 Query 289150 GATACTTG-AATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | ||| || ||||| |||||||||||| ||||| ||| | || | | ||| || Sbjct 1409 ACTCGTTGAAAAGAATGGTACATTTGCTTCACCTGCGGTTGCTTTGGCAATCAATGTTTT 1350 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 |||||| || |||||||| |||| | | || |||||| ||||| ||| | Sbjct 1349 ACCTGTACCTGGTGGTCCAACTAAAATTGCACCTCTTGGTATCTTTGCTCCAATGTCATG 1290 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 |||||| || |||||||||| | ||||| ||| |||| || |||||| ||| | Sbjct 1289 GAATTTCTTTGGATTCTTTAAAAAGTTTACAAATTCTTCAATCTCTACTTTTGCTTCACC 1230 Query 289329 ACATCCTGCTACATC 289343 | |||||| ||||| Sbjct 1229 AAGTCCTGCAACATC 1215 >seq2826 Length=2534 Score = 163 bits (180), Expect = 8e-35 Identities = 447/672 (67%), Gaps = 31/672 (5%) Strand=Plus/Plus Query 155877 GGGCAAAACAGCGACCAA-----ATTTTATTACCGATTACACGCTCCATAAATACATCAC 155931 || ||||| || |||||| ||||| || ||| ||||||||||||| | ||||| Sbjct 1494 GGACAAAAGAGTGACCAATCACCATTTTGTT--CGA---CACGCTCCATAAAGATATCAC 1548 Query 155932 TCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTC 155990 | |||| | |||||||| || || || || | |||||| | ||| ||| || ||| Sbjct 1549 TAACCCAGAGGGCATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTT-TTC 1607 Query 155991 CGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTA 156050 || || | || || | ||| | ||| |||||||| || | ||||| | Sbjct 1608 TTGAGATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGGCA 1667 Query 156051 CCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGC 156107 || || || |||||||| ||||| || || ||||| || | |||||| |||| ||| Sbjct 1668 CCCTTTCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAAGC 1727 Query 156108 ATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAAC---CAGATGAG 156164 || || | | ||||||| |||||||||||| || ||||||| ||| || | Sbjct 1728 ATTGGTACCAAACCATTGCTAGTGCCATTGGTACCACGAATAT---AACTTTGAGCGGCA 1784 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 |||| ||||| | | ||||||||||| | | || ||||| || |||| Sbjct 1785 CGAATTTTATGTACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGT 1844 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCAT-CTTCCATTGATAGTAGATAGCACGA 156283 || | || | | ||||| || || ||||| | |||| |||| ||| | || || Sbjct 1845 TTCAAGGTGTCATAGATACCATCGATTGAATCCTCCTTCATTTGAACCAAGA-AACATGA 1903 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | | ||| ||| ||||| ||||||||||||| ||| ||||| ||||| | || Sbjct 1904 AGACATTTGTGGTGAAGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAATAG 1963 Query 156344 CTTATTAGACATATAATCG-TATGTCTCCTTAATC---TTCTCAAGATTAGACCCGTGAA 156399 || | || | | ||| || || || ||| ||||| | || || | Sbjct 1964 TTTCTCCGATAGA-CGTCGATAGGT---GTTGATCGCAGACTCAATGTCCTCGCCATGGA 2019 Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459 ||| || || || | |||| ||||||| || |||||||||||||| ||| |||| | Sbjct 2020 TACCAATGGAAACACGCATCAACATATGTTGTGGACGCTCTACAATTTTACCACCAATAC 2079 Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGT 156519 | ||||||||| || |||| ||||| ||||| || ||||| | |||||||| | Sbjct 2080 GATGAAGGTATGAACGCTCCAATGTTTTGAACCCAAAGAAATCATAGTCGAAATCACGAT 2139 Query 156520 TGTAATCAATCA 156531 ||||| |||| Sbjct 2140 AATAATCGATCA 2151 >seq847 Length=9535 Score = 136 bits (150), Expect = 1e-26 Identities = 236/341 (69%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| ||||| |||||| ||| || |||||||| ||||| | |||||| Sbjct 2295 ATTTCTAACGGTGGCATCATATTTAATGGAAACATCTTCCATTGCCTTGACGAGACGACG 2236 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||||| ||| ||| |||||||| || ||||| || | ||| | | |||||| Sbjct 2235 TTGAATATAACCGGTTTCAGAGGTTTTTACGGCAGTATCGATCAAACCTTCTCTACCACC 2176 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||||||||| || | ||||| || || || | || | |||| |||| ||||| Sbjct 2175 CATAGCATGGAAAAAGAACTCTTGTGGAGTTAAACCACGAAGATAGGAATTCTCTACGAA 2116 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 |||||| ||| || || ||| ||| || || ||||| | || || | | | Sbjct 2115 ACCACGACTCTCTGGACCATAGTCATCCTTTGTGAAATGTGGTAACGTTCTACTTTGGAA 2056 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || | || ||||| || || || ||||| || || || | || | |||||||| || Sbjct 2055 ACCAAAGGGAATACGTTTACCCTCGACGTTTTGTTGGCCTACACATGCCATCATCTGTGA 1996 Query 302838 AATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 ||||| ||| | | || || || || ||| ||||||| Sbjct 1995 GATATT--AATGAAGGAACCTTTTGAACCTGCAGTTACCAT 1957 >seq285 Length=23570 Score = 95.1 bits (104), Expect = 4e-14 Identities = 283/430 (66%), Gaps = 24/430 (6%) Strand=Plus/Plus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||| ||||| | | ||||||||||||| ||||| | ||| | ||||||| || Sbjct 12935 TAGCACCATGAGCCAAAAGGGAATCACGTTCCATCTCACCGAAACGAATACCACCACCA- 12993 Query 233331 TTGACCT----ACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGA 233386 |||| ||| | | || |||||||||||| || | | ||| ||||||| Sbjct 12994 ---ACCTTACGACCTTTAATTGGTTGACGAGTTAAGGCATTAACTTTACCGAGAGCACG- 13049 Query 233387 TAATTAAT-TTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAA 233445 || || || |||||||||||||||||| || ||| ||||||||| ||| | ||| Sbjct 13050 TACTTGATATTTATCTTTAACCATATGACGCAATCTTTGATAATAACAAACACCGAAAAA 13109 Query 233446 TAGTTCTGCGTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTACCCGATGA 233505 | ||| | |||| || |||| | ||||||||| | ||| ||||| | Sbjct 13110 GATTTCACATTCAAATTCTTTACCAGTTGTACCGCTGTACATTTGTTCGTTACCGAAACG 13169 Query 233506 ATTGTAACCAATATCTTTT---AATAGAGAACCAAATACCTGA--TGCTTTGGACCTTT- 233559 |||| |||| | ||||| ||| | |||||| | | | |||| | ||| Sbjct 13170 ATTGAAACC---AGCTTTTGCCAATTGTTCACCAAAGAAATCAATTGCTGTATTATTTTC 13226 Query 233560 ----ATTAGCAAACGCAGTACAATCACCAAAACCACCATACGTCGCACACGCTTTACCCA 233615 | | | ||| || || ||| || ||||| | |||| ||||| ||| Sbjct 13227 ATCAAATTGGAAA-GCGGTTGCATCTTGGAATTTACCATGAATAGCACCAGCTTTGCCCG 13285 Query 233616 TTAAAGTTTCTATCAACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAA 233675 |||| | || | |||| ||| || ||||| | | ||| | ||| | ||||||||||| Sbjct 13286 CTAAAATCTCCACCAACATACCAATTGTCATACGAGATGGGAAAGCATTTGGATTGATAA 13345 Query 233676 TTAAATCTGG 233685 ||| |||||| Sbjct 13346 TTACATCTGG 13355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471758933810407