Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq861 118 1e-21 seq1134 102 1e-16 seq312 87.8 2e-12 >seq861 Length=9344 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 165962 CAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAAAATTTATGT 166021 |||||| || |||||||| |||||||| || | |||||||||||| |||| | Sbjct 3301 CAATTATCGGGTTATGTTGCTGAACAAACTTCATACCATCATGGTGAACAATCTTTAAAT 3360 Query 166022 GAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTACTTGAA 166081 ||| || |||| | || || ||||||||||| |||||||| || |||| | | Sbjct 3361 TCAACAATCGTTAAAATGGCTCATAATTTTGTTGGTTCAAATAATTTACCATTGTTAACA 3420 Query 166082 CCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGCATCAAGATAT 166141 || ||||||||||||||| | || |||| ||| ||||||||| || |||||||| Sbjct 3421 CCAAGTGGTCAATTTGGTACTCGTTTGCAAGGTGGTTCAGATTCTGCATCAGCAAGATAT 3480 Query 166142 ATTTATACCAAAC 166154 |||| ||| |||| Sbjct 3481 ATTTTTACAAAAC 3493 >seq1134 Length=7495 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 194236 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGG 194294 ||| |||| |||| || ||||| |||| || | |||| |||||| || |||||||| Sbjct 4741 CGTGTACCACAAATTGGTGATAAGTTTTCATCTCGTCATGG-TCAAAAGGGTACTTGTGG 4683 Query 194295 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 194354 |||| ||| ||||||||| |||||| || | ||||| |||||||||||||| Sbjct 4682 TATGGCATATCGTCAAGAAGATTTGCCATGGACCGTTGAGGGTATTGTACCAGATATTAT 4623 Query 194355 TATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 194404 | | |||||| || |||||| || | ||||||||| |||| | |||| Sbjct 4622 TGTAAATCCACATGCTATTCCATCTCGTATGACCATTGGTCAATTGATTG 4573 >seq312 Length=22109 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 114972 TACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATGGTATTGAAGTAGG 115031 ||| ||||| ||||||| ||||||| |||||| | |||||| ||||| || Sbjct 9212 TACCTATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGAAAAATTTCATTGACTGTGG 9153 Query 115032 AGCAGGTGTTGTTGATGAAGATTATCGAGATAATTTAATGGTTATTTTATATAACCATTC 115091 || |||||| | || |||||| ||| |||| | || |||||| |||||||| Sbjct 9152 TGCTGGTGTTATCGACTCTGATTATAGAGGTAATGTTGGTGTCGTTTTATTCAACCATTC 9093 Query 115092 AGATGTTGATTTTAAAATTGAAGTTAAAGATAGGATTGCGCAATTAATTGTTGAAA 115147 | ||||||||||| ||||| || ||||| || || |||||||| |||||| Sbjct 9092 AAATGTTGATTTTCCAATTGCTATTGGTGATAGAATCGCTCAATTAATCTTTGAAA 9037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632465004060680