Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq52 93.3 3e-14 seq140 89.7 4e-13 seq1461 87.8 1e-12 seq89 86.0 5e-12 >seq52 Length=54870 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 ||||| ||||||||| ||||| ||||| ||||| || |||||||||||| | ||| || Sbjct 45229 ATTTACAATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATTACCTTAGAAGTTGA 45288 Query 110326 GCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGT 110385 | |||| | | | |||||| || ||| || |||||||| | || Sbjct 45289 AGGTAGTGATAACATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACC 45348 Query 110386 GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGA 110445 || |||||| | || |||| || |||||||| |||| |||| | || | | || Sbjct 45349 AGACCAACAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGA 45408 Query 110446 TTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || ||||||||||| || | || |||| |||||| | |||| || Sbjct 45409 TTATAATATCCAAAAAGAATCCACTCTCCATTTGGTTTTAAGATTAAGAGGTGG 45462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || ||||| || ||| | || || | | Sbjct 45464 ATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACAATCACCTTAGAGGTTGAAGGTTCC 45523 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | ||| | |||||| ||||| || |||||||| | || || ||| Sbjct 45524 GATAATATCGAAAATGTAAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGACCAA 45583 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||||| || |||||||| | || |||| | || | | |||||||| Sbjct 45584 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGATTACAAT 45643 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||||||||| || | || | || |||||| | |||| || Sbjct 45644 ATCCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGTGG 45690 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || |||||||||||| | ||| || | | Sbjct 45692 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGC 45751 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | | | |||||| || ||| || |||||||| | || || ||| Sbjct 45752 GATAACATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAA 45811 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| || ||||| || | || |||| | || | | ||||||||| Sbjct 45812 CAAAGATTAATTTTCGCTGGTAAGCAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 45871 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||| || || | || | || |||||| | |||| || Sbjct 45872 ATCCAAAAAGAGTCCACTCTCCATTTAGTTTTAAGATTAAGAGGTGG 45918 >seq140 Length=35707 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || ||||| || ||| | || ||| | Sbjct 25548 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACAATCACCTTAGAGGTTGAGGGTTCT 25489 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||| | ||| | |||||| ||||| || |||||||| | || |||||| Sbjct 25488 GATAATATCGAAAATGTAAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGATCAA 25429 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| || |||||||| | || |||| | || | | ||||||||| Sbjct 25428 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 25369 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||||||||| || Sbjct 25368 ATCCAAAAAGAATCCAC 25352 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 ||| | ||||||||| ||||| |||||| | || || |||||||| || ||||| || Sbjct 26239 ATTGATAATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACCATCACTCTCGAAGTTGA 26180 Query 110326 --GCC-TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382 || |||| ||| ||| | |||||| || || ||||||||||| | || Sbjct 26179 AGGCAGTGACAATA---TCGAGAACGTAAAAGCTAAAATCCAAGACAAAGAAGGTATTCC 26123 Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442 || ||||||||| | |||| || |||||||| | || |||| | || | | Sbjct 26122 ACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTC 26063 Query 110443 GGATTACAACATTCAAAAAGAATCTAC 110469 ||||||||||| ||||||||||| || Sbjct 26062 TGATTACAACATCCAAAAAGAATCCAC 26036 >seq1461 Length=5937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| ||||| ||||| || || ||||| || | ||| ||| || | Sbjct 4122 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCA 4181 Query 110332 CGATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 |||| | | | | || |||||| || ||| ||||||||||| | || || | Sbjct 4182 -GATAATATTGAAAATGTTAAAACAAAA-ATTCAAGACAAAGAAGGTATCCCACCAGACC 4239 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||||||| | |||| || |||||||| |||| |||| | || | | ||||||| Sbjct 4240 AACAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTACA 4299 Query 110451 ACATTCAAAAAGAATCTAC 110469 |||||||||| ||||| || Sbjct 4300 ACATTCAAAAGGAATCCAC 4318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 110269 TAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCC 110328 || ||||||||| ||||| |||||| | || || ||||| ||||| ||||| || Sbjct 3434 TATAATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACAATTACTCTCGAAGTAGAAGG 3493 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||| | | | | | |||||| || ||| || || ||||| | || || Sbjct 3494 TTCCGACAATATTGAAAATGTAAAAACCAAAATTCAAGATAAGGAAGGTATCCCACCAGA 3553 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 |||||| | ||||||| || |||||||| |||| |||| | || | | ||||| Sbjct 3554 CCAACAACGTCTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTA 3613 Query 110449 CAACATTCAAAAAGAATCTAC 110469 |||||||||||| ||||| || Sbjct 3614 CAACATTCAAAAGGAATCCAC 3634 >seq89 Length=43963 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || || ||||| ||||| || |||||||| || ||||| || | Sbjct 14107 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14166 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || | ||| | || ||| |||||| ||||||||||| | || ||| Sbjct 14167 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 14226 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | ||||| | ||| |||||||| | || |||| | || | | ||||| Sbjct 14227 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 14286 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| ||||| || | ||| | || |||||| | |||| || Sbjct 14287 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 14336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412825946981723