Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq861 114 2e-20 seq1134 105 8e-18 seq312 93.3 5e-14 >seq861 Length=9344 Score = 114 bits (126), Expect = 2e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 163010 CAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACAAAATTTATGT 163069 |||||| || |||||||| |||||||| || | || ||||||||| |||| | Sbjct 3301 CAATTATCGGGTTATGTTGCTGAACAAACTTCATACCATCATGGTGAACAATCTTTAAAT 3360 Query 163070 GAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTACTTGAA 163129 ||| || |||| | || || ||||||||||| |||||||| || |||| | | Sbjct 3361 TCAACAATCGTTAAAATGGCTCATAATTTTGTTGGTTCAAATAATTTACCATTGTTAACA 3420 Query 163130 CCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGCATCAAGATAT 163189 || ||||||||||||||| | || |||| ||| ||||||||| || |||||||| Sbjct 3421 CCAAGTGGTCAATTTGGTACTCGTTTGCAAGGTGGTTCAGATTCTGCATCAGCAAGATAT 3480 Query 163190 ATTTATACCAAAC 163202 |||| ||| |||| Sbjct 3481 ATTTTTACAAAAC 3493 >seq1134 Length=7495 Score = 105 bits (116), Expect = 8e-18 Identities = 127/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||| |||| |||| || ||||| |||| || | |||| | |||| || |||||||| Sbjct 4741 CGTGTACCACAAATTGGTGATAAGTTTTCATCTCGTCATGGTC-AAAAGGGTACTTGTGG 4683 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 |||| ||| ||||||||| |||||| || | | ||||| |||||||||||||| Sbjct 4682 TATGGCATATCGTCAAGAAGATTTGCCATGGACCGTTGAGGGTATTGTACCAGATATTAT 4623 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 | | |||||| || ||||||||| | ||||||||| |||| | |||| Sbjct 4622 TGTAAATCCACATGCTATTCCATCTCGTATGACCATTGGTCAATTGATTG 4573 >seq312 Length=22109 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 114834 TACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAGAATGGAATTGAAGTAGG 114893 ||| ||||| ||||||| ||||||| |||||| | || ||| ||||| || Sbjct 9212 TACCTATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGAAAAATTTCATTGACTGTGG 9153 Query 114894 AGCAGGTGTTATCGATGAAGATTATCAAGATAATTTAATGGTTATTTTACATAACCATTC 114953 || ||||||||||| |||||| || |||| | || ||||| |||||||| Sbjct 9152 TGCTGGTGTTATCGACTCTGATTATAGAGGTAATGTTGGTGTCGTTTTATTCAACCATTC 9093 Query 114954 AGATGTTGATTTTAAAATTGAAGTTAAAGATAGAATTGCTCAATTAATTGTTGAAA 115009 | ||||||||||| ||||| || |||||||| ||||||||||| |||||| Sbjct 9092 AAATGTTGATTTTCCAATTGCTATTGGTGATAGAATCGCTCAATTAATCTTTGAAA 9037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635152899531080