Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1705 147 3e-30 seq861 87.8 2e-12 >seq1705 Length=5068 Score = 147 bits (162), Expect = 3e-30 Identities = 471/723 (65%), Gaps = 37/723 (5%) Strand=Plus/Minus Query 93140 GGGCTGCTCAAGATACTATGCCATTAGACTGGTCTTTACCTTTAGCCAAAGAACTTGCTT 93199 ||||||| ||| ||| ||| | | || ||| | ||||| || || |||| || Sbjct 4626 GGGCTGCCCAACCTACAATGGGACTTGATTGGGCATTACCATTGGCACAAGATATTTTGC 4567 Query 93200 TATCTGGTAAAGAAACAATTATTTCATTCGGTGGAGCAAGTAACCCAGATATTTCATCTA 93259 ||||| ||| | ||||||||||| ||||| || || ||||||| || || Sbjct 4566 TATCTAATAAGAAGGTTATTATTTCATTTGGTGGTGCTTCAAATTCAGATATCTCCACTT 4507 Query 93260 AATTTTCAATTGATGAATTGGTTCAAACTTACTTTGATGTAATAGAATTATATAATCCAT 93319 |||||| |||| |||||||| ||||||| | || || ||||| ||| | | | Sbjct 4506 CATTTTCTGTTGAAAAATTGGTTGAAACTTATAGTAATACCATTGAATTGTATGGTACTT 4447 Query 93320 CTGGATTAGATTTTGATTTAGAAAATGGTTTGTATGACGCAGAAAAAATAAGTTCAGCTG 93379 ||||||||||||||||||||| |||||||| | | || |||| | | || Sbjct 4446 ATGGATTAGATTTTGATTTAGAGAATGGTTTAT---TCAATGATAAAAACATTGCA---- 4394 Query 93380 TTGGCATT-------GTCAAATCTAAATACCCTAA--TTGTAATATTTCTCTGACACTAC 93430 |||||| | || ||||| ||||| || || ||||| ||| | ||||||| | Sbjct 4393 TTGGCACTAAAAACCGTTAAATCAAAATATCCAAATGTTGTA--ATTAGTTTGACACTTC 4336 Query 93431 CAACAATGCCAACTGGTTTAACGGCTGTTGGATTAAAACTTGTCTCA--ATTTTTCaaaa 93488 ||||| |||||||||||||| | || || | ||| | |||| || Sbjct 4335 CAACATCACCAACTGGTTTAACTGAGAAGGGTTTGAGTAGTGTAGAAGCATTTAGTGAAC 4276 Query 93489 aaaTAATTTTGATTTTGTGGTCAATGGTATGGCTATGGATTATTATTCTCCGGAAGCAGC 93548 || | |||||||| | || ||||||||||| |||||||||||| || ||| Sbjct 4275 AAGGA--TTTGATTTCATTGTTAATGGTATGGCAATGGATTATTATAGTCAAGAATGGAA 4218 Query 93549 TTTGGATATGGGTAAAGCTGCCGTTGAAGCAGCAAAAAGTATTGCATCTCAACTGGCTAA 93608 | | |||||| | ||| | ||| ||| |||||| | |||| | | Sbjct 4217 TGATAAAATGGGTGAGGCTTCAAACCTAGCTTCAACAAGTATCAAAGATCAATTAAAAGA 4158 Query 93609 AGTGTACCCATC--TGAACCA-TCT-ATATATT--CTAAGGTAGGAATAACACCTATGAT 93662 | | || ||||| ||| | ||| | |||| | || || | | | || || ||||| Sbjct 4157 ATTTTATCCATCATTGAGTGATTCTCAATTATTCGCAAAAGTTGCAGTCACTCCAATGAT 4098 Query 93663 TGGTCTAAATGATGATTTATCAATGTTTAAATTAAAAGATGCTGCTCTTTTAGGATCATT 93722 |||| |||||||||||||| || | |||| | ||||||||||| | | | ||||| Sbjct 4097 TGGTTTAAATGATGATTTAAGTATCTATAAAATTGAAGATGCTGCTATAACAAGTTCATT 4038 Query 93723 CCAAAAATTAAACTTTATAGGTTT---------TTGGTCCTTCAATCGAGATAATCCATC 93773 |||| ||| || ||||| ||| || ||||| ||||||||||| Sbjct 4037 TGCTAAATCAAATGGAATGGGTTTCATTTCATCATGGGATTTTAATCGTGATAATCCATC 3978 Query 93774 ATCTTTGGGACATGTTGACCTACAAACAAGCAGTAATCCGGAACAAAAAGAAAGTGGTGA 93833 ||| || ||| ||||||| || ||| ||||| | ||||||||| |||||| Sbjct 3977 ATCATTTGGATATGTTGATTTAACAACTTCTTCAAATCCAAATCAAAAAGAATCTGGTGA 3918 Query 93834 GTA 93836 || Sbjct 3917 ATA 3915 >seq861 Length=9344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/186 (71%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 172907 GGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACAAAACCTTT--GTGAAACTA 172964 ||||| |||| ||||||||| || | |||||||||| || |||| | ||| | Sbjct 3310 GGTTATGTTGCTGAACAAACTTCATACCATCATGGTGAAC--AATCTTTAAATTCAACAA 3367 Query 172965 TAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAACATTACTTGAACCAGATG 173024 | | ||| | || || ||||||| ||| ||||||| || |||| | |||| || Sbjct 3368 TCGTTAAAATGGCTCATAATTTTGTTGGTTCAAATAATTTACCATTGTTAACACCAAGTG 3427 Query 173025 GTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGCATCAAGGTATATTTATA 173084 |||| ||||||||| | | |||| ||| |||||| || || |||| ||||||| || Sbjct 3428 GTCAATTTGGTACTCGTTTGCAAGGTGGTTCAGATTCTGCATCAGCAAGATATATTTTTA 3487 Query 173085 CTAAAC 173090 | |||| Sbjct 3488 CAAAAC 3493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655254517799000