Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq861 122 1e-22 seq1134 96.9 4e-15 seq312 93.3 5e-14 seq1705 89.7 6e-13 >seq861 Length=9344 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 || ||||| | |||||| || |||||||| |||||||| || | ||||||||| Sbjct 3289 ATAAAAGTATCACAATTATCGGGTTATGTTGCTGAACAAACTTCATACCATCATGGTGAA 3348 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 ||| |||| | ||| || |||| | || || ||||||||||| |||||||| || Sbjct 3349 CAATCTTTAAATTCAACAATCGTTAAAATGGCTCATAATTTTGTTGGTTCAAATAATTTA 3408 Query 165280 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCG 165339 |||| | ||| ||||||||||||||| | || |||| ||| ||||||||| Sbjct 3409 CCATTGTTAACACCAAGTGGTCAATTTGGTACTCGTTTGCAAGGTGGTTCAGATTCTGCA 3468 Query 165340 GCATCAAGATATATTTATACCAAAC 165364 || |||||||||||| ||| |||| Sbjct 3469 TCAGCAAGATATATTTTTACAAAAC 3493 >seq1134 Length=7495 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051 ||| |||| |||| || ||||| |||| || | |||| | |||| || |||||||| Sbjct 4741 CGTGTACCACAAATTGGTGATAAGTTTTCATCTCGTCATGGTC-AAAAGGGTACTTGTGG 4683 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 |||| ||| ||||||||| |||||| || | ||||| |||||||||||||| Sbjct 4682 TATGGCATATCGTCAAGAAGATTTGCCATGGACCGTTGAGGGTATTGTACCAGATATTAT 4623 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 193161 | | |||||| || |||||| || | ||||||||| |||| | |||| Sbjct 4622 TGTAAATCCACATGCTATTCCATCTCGTATGACCATTGGTCAATTGATTG 4573 >seq312 Length=22109 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 115137 TACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATGGTATTGAAGTAGG 115196 ||| ||||| ||||||| ||||||| |||||| | |||||| ||||| || Sbjct 9212 TACCTATGGTAGAATTGCACCAAGATCAGGTTTAGCATGGAAAAATTTCATTGACTGTGG 9153 Query 115197 AGCAGGTGTTGTCGATGAAGATTATCGAGATAATTTAATGGTTATTTTACATAACCATTC 115256 || |||||| |||| |||||| ||| |||| | || ||||| |||||||| Sbjct 9152 TGCTGGTGTTATCGACTCTGATTATAGAGGTAATGTTGGTGTCGTTTTATTCAACCATTC 9093 Query 115257 AGATGTTGATTTTAAAATTGAAATTAAAGATAGGATTGCGCAATTAATTGTTGAAA 115312 | ||||||||||| ||||| ||| ||||| || || |||||||| |||||| Sbjct 9092 AAATGTTGATTTTCCAATTGCTATTGGTGATAGAATCGCTCAATTAATCTTTGAAA 9037 >seq1705 Length=5068 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/105 (80%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 89447 GGCAAAATTATCCCAATGGTAGACCAAATCCTTTATATGCAAAACAAGCA--GAAATATG 89504 |||||||||| || ||||| ||||||||||| ||||| | ||||||||| |||||| Sbjct 4829 GGCAAAATTACCCAAATGGAAGACCAAATCCAATATATTCTAAACAAGCAATCAAATAT- 4771 Query 89505 GGGTGTAGATGGTTTAATTTTTGGTTTTATTACTTTATCAGCTAA 89549 ||| | ||||| |||||||| |||| ||||| ||| || |||| Sbjct 4770 -GGTATTGATGGATTAATTTTATGTTTCATTACGTTAGCACCTAA 4727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628506757992960