Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq356 95.1 2e-14 seq339 93.3 8e-14 seq1461 86.0 1e-11 seq64 86.0 1e-11 >seq356 Length=19801 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/134 (75%), Gaps = 11/134 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || ||||| |||||||| ||||| | || |||||||| Sbjct 11386 AGAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTACGACCATCTTCTAATTGTTTA 11445 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | || |||| |||||||||| |||| | || |||| |||||||||||||||||| Sbjct 11446 CCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATCTTTGCT 11505 Query 81753 TTTATATTTTCAAT 81766 || | ||||||||| Sbjct 11506 TTAACATTTTCAAT 11519 >seq339 Length=20847 Score = 93.3 bits (102), Expect = 8e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 95218 TGAAGTAATAGGTATAGACGAAGGTCAATTCTTCCTAGATATAGTAGAATTTAGTGAATC 95277 ||| ||||| ||||| || ||||||||||| |||| ||| | ||| ||||||||||| Sbjct 16061 TGATGTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGA 16120 Query 95278 GATGGCTAATTTAGGTAAAATAGTTATTATAGCCGCACTCAATGGT 95323 | || ||| |||||||| |||||||| ||||||||| ||||| Sbjct 16121 TTTAGCAAATCAAGGTAAAACCGTTATTATTGCCGCACTCGATGGT 16166 >seq1461 Length=5937 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/134 (73%), Gaps = 11/134 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || ||||| |||||||| ||||| | || |||||||| Sbjct 4777 AGAGTTGATTCCTTTTGGATATTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTA 4718 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || || | ||||||| |||| | || ||||||| ||||||||||||| Sbjct 4717 CCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGAATCTTTGTC 4658 Query 81753 TTTATATTTTCAAT 81766 |||| ||| ||||| Sbjct 4657 TTTACATTCTCAAT 4644 >seq64 Length=50952 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/142 (73%), Gaps = 11/142 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || || ||||| ||||| ||||| | || |||||||| Sbjct 24311 AGAGTTGATTCTTTTTGAATGTTATAGTCAGAGAGAGTACGACCATCTTCTAATTGTTTA 24370 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| || | ||||||| |||| | || |||| ||||||||||| || ||| Sbjct 24371 CCAGCAAAGATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTGGCT 24430 Query 81753 TTTATATTTTCAATCGTATTAC 81774 |||| ||||||||| ||| || Sbjct 24431 TTTACATTTTCAATGTTATCAC 24452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903376068596960