Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq316 105 2e-17 seq881 102 2e-16 seq861 102 2e-16 >seq316 Length=22015 Score = 105 bits (116), Expect = 2e-17 Identities = 314/469 (67%), Gaps = 23/469 (5%) Strand=Plus/Plus Query 131723 TTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAAT 131782 || ||||| | | | ||||| || || | |||| ||||||||||| |||| | | Sbjct 20501 TTAATTGAAACTTATATTAAAGATAAACAAACTAAAGATAAATTATTTAATGCAATTGAA 20560 Query 131783 AAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAA-ATGGATTCAAGATGATTC 131841 | | |||| |||||||||| ||||||||||| ||||| ||||||| |||||| Sbjct 20561 ACAATTCCATGTGTTAAAAAGAAGGCAGAATGGGC-ATTAAGATGGATT---AATGATT- 20615 Query 131842 CGCTAATT--TTTCTACAA-GACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTC 131898 | |||| ||| | || | | || || ||||| ||||| ||||||| ||||| Sbjct 20616 --CAAATTCATTTGCAGAACGTTTGGTTGCATTTGCAGCAGTTGAGGGTATAT--TTTTC 20671 Query 131899 A--GGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCA 131956 | ||| ||| ||| | || |||||| | || ||| | || || ||||| || | || Sbjct 20672 AGTGGTAGTTTTTGTTCAATTTTTTGGTTGAAAAAGAGAGGTTTAATGCCAGGTTTAACA 20731 Query 131957 TTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATC 132016 || || ||| |||| || || | ||||||| || ||| ||| |||||| | || Sbjct 20732 TTTTCAAATGAATTGATTTCACGTGATGAAGGTTTACATTGTGATTTTGCTTGTCTTCTC 20791 Query 132017 TATA-GAAAATTTGCTGATAAACTTGATGAAAATAATATT-AAACAACTTATAAGCGAAG 132074 |||| |||| | || ||| | ||| ||| | ||| |||||| | |||| || | Sbjct 20792 TATACGAAACTACAAAGA-AAATTGGATCCAAAAATCATTGAAACAA-TGATAAAGGATG 20849 Query 132075 CAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGA 132134 | |||| | || || ||||| ||| || | || || |||| || || |||| Sbjct 20850 CCGTTGCTTGTGAAAAAGAGTTCATTTGTGATTCATTACCAGTGGATTTAATCGGTATGA 20909 Query 132135 ATGCTGAC--TCTATGAAGGAGTACATTGAATTCGTTGCTGATCGTTTA 132181 | || || || ||| | |||||||| || |||||||||||| Sbjct 20910 A--CTCACGTTCAATGTCACAATACATTGAGTTTTGCGCTGATCGTTTA 20956 >seq881 Length=9205 Score = 102 bits (112), Expect = 2e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 |||||||| | ||||| ||||| |||||| | || || ||| ||||||||| | ||| Sbjct 8118 TGTTCAATCGTCAACCCTCACTTCATAAACTATCGATTATGTCTCATAAAGCAAGAGTTA 8059 Query 305394 TATC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTT 305452 | | |||| || || || || |||| | ||| |||||| || || ||||| ||||| Sbjct 8058 TGCCATGGAGA-ACCTTACGTTTCAATGAATGTGTTTGTACACCCTACAATGCAGATTTC 8000 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| ||||||||||| || ||| |||| ||| Sbjct 7999 GATGGTGATGAAATGAACATTCATTTACCACAA 7967 >seq861 Length=9344 Score = 102 bits (112), Expect = 2e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 279068 ATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCTTTA 279127 ||| | ||| | ||||||||||||||||| || || | ||||| |||| ||| | ||| Sbjct 2407 ATTTCTAAATTGGATGATGCAAACTGGGCAGGTGGACCAAAATCAAAAGAGTGTACATTA 2466 Query 279128 TTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGGT 279187 || | || ||||| ||||||||| |||| || | || |||||| ||| ||||| Sbjct 2467 ATTATAACAGAGGGTGATTCTGCTAAATCATTGGCATTGGCAGGTTTAGGTGTGGTTGGT 2526 Query 279188 CGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGAT 279241 ||| || |||||| || || || ||| | || ||| || | |||| |||||| Sbjct 2527 CGTAATGCATATGGTGTTTTCCCATTACGTGGAAAACTATTGAATGTACGTGAT 2580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186765494012671