Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq89 114 3e-20 seq356 109 1e-18 seq268 109 1e-18 seq140 109 1e-18 seq1461 105 2e-17 seq52 93.3 1e-13 seq64 91.5 3e-13 >seq89 Length=43963 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| |||||| | ||||| ||| |||| |||| ||||| Sbjct 14125 AAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGTTCAGACAACATCGAAAAC 14184 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| || || || ||| | |||||||| Sbjct 14185 GTCAAAGCCAA-GATTCAAGACAAAGAAGGTATCCCACCAGATCAACAACGTCTTATCTT 14243 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || || |||||||| | ||||| ||||||| ||| |||| || || || Sbjct 14244 TGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTATAACATCCAAAAGGAATC 14303 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || || ||| | ||||| ||| Sbjct 14304 AACCCTCCACTTAGTTTTAAGA 14325 >seq356 Length=19801 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| ||||| || || |||||||| ||| || || | | ||| Sbjct 11570 AAAACTCTTACAGGTAAAACAATTACATTGGAAGTTGAAGGTAGCGATAACATTGAAAAT 11511 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||||||||| |||||||| ||| || || |||||| | || || Sbjct 11510 GTTAAAGCAAA-GATTCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTT 11452 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || || |||||||| | ||| | | |||||||| |||| ||||| || Sbjct 11451 CGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAATATCCAAAAAGAATC 11392 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||||| | ||||| ||| Sbjct 11391 CACTCTTCATTTAGTTTTAAGA 11370 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| || || || ||| ||||||| | ||||| Sbjct 11342 AAAACCTTAACTGGTAAAACAATCACCTTAGAGGTTGAAGGTTCTGATAATATCGAAAAT 11283 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||| ||||| |||||||| || || || ||| | ||||| ||| Sbjct 11282 GTAAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTTC 11223 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| | ||| | | || || ||| |||| || || || Sbjct 11222 GCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTATAACATCCAAAAGGAATCA 11163 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 |||||||| | ||| | ||||| Sbjct 11162 ACTCTTCATTTAGTTCTAAGACT 11140 >seq268 Length=24546 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || ||| | ||||| ||| |||| || | | ||| Sbjct 17590 AAAACTTTAACTGGAAAAACCATAACTCTTGAAGTTGAAGGTTCAGATAATATTGAAAAT 17531 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| |||||| |||||| | || ||||||||| || || |||||| | ||||| Sbjct 17530 GTAAAAGCAAAA-ATTCAAAATAAGGAAGGAATTCCTCCAGATCAACAAAGATTAATCTT 17472 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || ||||||||||| | ||||| | |||||||| | || || || || Sbjct 17471 TGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCAGATTACAATATTCAAAAGGAATC 17412 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| | ||||| |||||||| Sbjct 17411 AACACTTCATTTAGTTTTAAGACTTCG 17385 >seq140 Length=35707 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||| ||| ||||||| | | ||| Sbjct 25761 AAAACTTTAACTGGTAAAACAATCACATTGGAAGTTGAAGGTTCTGATAACATTGAAAAT 25702 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| || || ||| ||| | || || || Sbjct 25701 GTCAAAGCCAAA-ATCCAAGACAAAGAAGGTATCCCACCAGACCAACAACGTCTCATTTT 25643 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || ||||||||||| | ||| | | ||||||||| |||| ||||| || Sbjct 25642 CGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAACATCCAAAAAGAATC 25583 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||| ||| | ||| | ||| Sbjct 25582 CACTCTCCACTTAGTTCTTAGA 25561 >seq1461 Length=5937 Score = 105 bits (116), Expect = 2e-17 Identities = 140/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACA-CAGTC-GAAT 206242 ||||| || || || ||||| || ||| | ||||| ||| || ||||| || | |||| Sbjct 3909 AAAACCCTTACTGGTAAAACTATTACTCTCGAAGTTGAAGGTAGTGACAACATTGAGAAT 3968 Query 206243 CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 |||||| |||||||||||| || ||||| || || || ||| | || || | Sbjct 3969 --GTAAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCAGATCAACAACGTCTCATTT 4026 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 ||||||| || || || |||||||| | || || |||||||||| |||| ||||| | Sbjct 4027 TCGCCGGTAAACAATTAGAAGATGGTCGTACATTATCCGATTACAATATCCAAAAAGAAT 4086 Query 206363 CTACTCTTCAC 206373 | ||||||||| Sbjct 4087 CCACTCTTCAC 4097 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || ||| | ||||| ||| |||| |||| | ||| Sbjct 3453 AAAACTCTTACTGGAAAAACAATTACTCTCGAAGTAGAAGGTTCCGACAATATTGAAAAT 3512 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| || |||||||| || ||||| || || ||| ||| | ||||| ||| Sbjct 3513 GTAAAAACCAAAATTCAAGATAAGGAAGGTATCCCACCAGACCAACAACGTCTTATTTTC 3572 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| | ||| | | ||||||||| | || || || || Sbjct 3573 GCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCC 3632 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 3633 ACTCTCCA 3640 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || || ||||| ||| || |||| |||| Sbjct 3681 AAAACACTCACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGCGACAACATCGAGAAT 3740 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||||||||| || ||||| || || ||| ||| | || || ||| Sbjct 3741 GTAAAGACAAAGATTCAAGACAAGGAAGGTATCCCACCAGACCAACAACGTCTCATTTTC 3800 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || || ||||| || | ||| | | ||||||||| |||| || || || Sbjct 3801 GCTGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACAACATCCAAAAGGAATCC 3860 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 3861 ACTCTCCA 3868 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACA-CAGTC-GAA 206241 |||||| ||||| || ||||| || || || ||||| ||| || ||||| || | ||| Sbjct 4364 CAAAACCCTCACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGTGACAACATTGAGAA 4423 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 | || ||| || |||||||| || ||||| || || || ||| | || || Sbjct 4424 T--GTTAAGACCAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAACAACGTCTCATT 4481 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 |||||||| || || ||||||||||| | ||| | | ||||||||| |||| || || Sbjct 4482 TTCGCCGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAACATCCAAAAGGAA 4541 Query 206362 TCTACTCTTCA 206372 || ||||| || Sbjct 4542 TCCACTCTCCA 4552 >seq52 Length=54870 Score = 93.3 bits (102), Expect = 1e-13 Identities = 169/244 (69%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 206147 ATATATAAAGTAAGGCTAAAATGTAC----CAGATATTTTGCAAAACGCTCACAGGAAAA 206202 ||||||||| || ||||| ||| || || ||| ||||| | || || ||| Sbjct 45213 ATATATAAAAAAA----AAAATTTACAATGCAAATTTTTGTTAAAACATTAACTGGTAAA 45268 Query 206203 ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAA-GCAAAAGATTCA 206261 || || || || ||||| ||| || ||| | | ||| ||||| || ||| ||||| Sbjct 45269 ACCATTACCTTAGAAGTTGAAGGTAGTGATAACATTGAAAATGTAAAAGCTAAA-ATTCA 45327 Query 206262 AGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGA 206321 ||| |||||||| ||| || ||| ||| | || || ||||| || || || ||||| Sbjct 45328 AGATAAAGAAGGTATTCCACCAGACCAACAACGTCTCATTTTCGCTGGTAAACAATTGGA 45387 Query 206322 AGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 |||||| | ||| | | ||||| || |||| ||||| || ||||| || | ||||| Sbjct 45388 AGATGGTCGTACTCTCTCTGATTATAATATCCAAAAAGAATCCACTCTCCATTTGGTTTT 45447 Query 206382 GAGA 206385 ||| Sbjct 45448 AAGA 45451 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || || |||||||| ||| || ||| | | || Sbjct 45935 AAAACCTTAACTGGTAAAACAATTACATTGGAAGTTGAAGGTAGTGATAACATTGAGAAC 45994 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| || || || ||| | ||||| || Sbjct 45995 GTCAAAGCCAA-GATTCAAGATAAAGAAGGTATCCCACCAGATCAACAACGTCTTATTTT 46053 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || || |||||||| | ||| | |||| || ||| |||| ||||| || Sbjct 46054 CGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTATAACATCCAAAAAGAATC 46113 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||| ||| | ||| | ||| Sbjct 46114 CACTCTCCACTTAGTTCTTAGA 46135 >seq64 Length=50952 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || ||||||||||| ||| || ||| | | ||| Sbjct 24495 AAAACTTTAACTGGTAAAACAATTACTTTGGAAGTTGAAGGTAGTGATAACATTGAAAAT 24436 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| ||| || || ||| | || ||||| Sbjct 24435 GTAAAAGCCAAA-ATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGTCTCATCTT 24377 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || || |||||||| | ||| | | || || ||| | || ||||| || Sbjct 24376 TGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTATAACATTCAAAAAGAATC 24317 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||||| | ||||| ||| Sbjct 24316 AACTCTTCATTTAGTTTTAAGA 24295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181773692992231