Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq64 113 4e-20 seq268 95.1 1e-14 seq140 95.1 1e-14 seq89 95.1 1e-14 seq1461 89.7 5e-13 seq356 86.0 6e-12 >seq64 Length=50952 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| ||||| | |||| |||||||||||||| ||||| | ||||| |||| Sbjct 24299 AAAACTAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCAGAGAGAGTACGACCATCT 24358 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | |||||||| | | |||| ||||| ||||||||||| || || ||||||||||| Sbjct 24359 TCTAATTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCT 24418 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 |||||| ||| | | ||| | |||| | || ||||| | || | ||| Sbjct 24419 TGAATTTTGGCTTTTACATTTTCAATGTTATCACTACCTTCAACTTCCAAAGTAATTGTT 24478 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| | |||||| | ||||| ||||| Sbjct 24479 TTACCAGTTAAAGTTTTAACAAAAATTTGCAT 24510 >seq268 Length=24546 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| ||||| | |||| || |||||||| ||||| || | ||||| |||| Sbjct 17394 AAAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCTGATAAAGTACGACCATCT 17453 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | |||||||| | | |||||| | |||||||||||||| || ||||| |||| Sbjct 17454 TCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATTT 17513 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||||||| ||| | | ||| | | |||| | || ||||| | || | ||| Sbjct 17514 TGAATTTTTGCTTTTACATTTTCAATATTATCTGAACCTTCAACTTCAAGAGTTATGGTT 17573 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| | |||||| | ||||| ||||| Sbjct 17574 TTTCCAGTTAAAGTTTTAACAAAAATTTGCAT 17605 >seq140 Length=35707 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | | || || ||||||||||| || || | ||||| |||||| Sbjct 25795 AACTAAATGGAGAGTAGATTCCTTTTGAATGTTATAATCAGAAAGAGTACGACCATCTTC 25854 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||||| | |||| ||||| ||||| ||||| || || |||||||| || Sbjct 25855 TAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTG 25914 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| ||| | | ||| | |||||| || ||||| | || | ||||| Sbjct 25915 GATTTTGGCTTTGACATTTTCAATGTTATCGGAACCTTCGACTTCTAATGTGATTGTTTT 25974 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| |||||||| | ||| || ||||| Sbjct 25975 ACCAGTGAGAGTTTTAACGAAGATTTGCAT 26004 >seq89 Length=43963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| || || | | |||| || ||||| ||||| || ||| | ||||| |||| Sbjct 14321 AAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGATAAAGTACGACCATCT 14262 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | |||||||||| | |||| ||||| ||||||||||| || || |||||||| || Sbjct 14261 TCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 14202 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||| || ||| | | ||| | | || | || ||||||| || | ||| Sbjct 14201 TGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATGGTT 14142 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| | ||||| | ||| || ||||| Sbjct 14141 TTACCAGTTAAGGTTTTAACGAAGATTTGCAT 14110 >seq1461 Length=5937 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||||||||| || | ||||| |||||| | |||||||| | Sbjct 3631 GATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCTTCCAATTGTTTACCAGCG 3572 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||| ||||| ||||| || || ||||| ||||| |||||| ||| | Sbjct 3571 AAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTTGGTTTTTACA 3512 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | | | |||| || ||||||| || | ||||| ||||| |||||||| Sbjct 3511 TTTTCAATATTGTCGGAACCTTCTACTTCGAGAGTAATTGTTTTTCCAGTAAGAGTTTTA 3452 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 3451 ACAAAAATTTGCAT 3438 >seq356 Length=19801 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| ||||| | | || |||||||| || ||||| || | ||||| |||| Sbjct 11374 AAAACTAAATGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTACGACCATCT 11433 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | |||||||| | | |||| | ||||||||||| || || ||||||||||| Sbjct 11434 TCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCT 11493 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||| ||| ||| | | ||| | ||||| | || ||||| | || | ||| Sbjct 11494 TGAATCTTTGCTTTAACATTTTCAATGTTATCGCTACCTTCAACTTCCAATGTAATTGTT 11553 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||||||| | ||||| ||||| Sbjct 11554 TTACCTGTAAGAGTTTTAACAAAAATTTGCAT 11585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476592665781960