Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1364 147 3e-30 >seq1364 Length=6249 Score = 147 bits (162), Expect = 3e-30 Identities = 348/523 (67%), Gaps = 2/523 (0%) Strand=Plus/Minus Query 161174 GAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATAT 161233 || || || || |||| ||||| |||||||| |||||||| || || | || ||| Sbjct 5098 GAAATATATAATTTAGGAGCACAAAGTCATGTTAAAGTATCATTTGATATGTCAGAGTAT 5039 Query 161234 ACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTC-TCCTAGG 161292 || | | ||||| | ||| || | ||||||| ||| ||||| | | | Sbjct 5038 ACTGGTGATGTTGATGGATTAGGATGTCTTCGTTTATTGGATGCAATTCGTAGTTGTGGA 4979 Query 161293 TATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACA 161352 | || | | ||| | ||| ||||| ||||| ||| ||| | ||||| || || Sbjct 4978 TTAGAGAAAAAGGTTAAATAT-TACCAAGCATCAACCTCTGAACTCTATGGTAAAGTTCA 4920 Query 161353 AGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAA 161412 ||||| ||||| ||| || ||||| ||||| ||||| || ||||| | ||| || || Sbjct 4919 AGAGATTCCACAATCAGAGACCACACCATTCTATCCACGTTCACCATACGCCGTTGCAAA 4860 Query 161413 ACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAG 161472 || || | |||||||| || ||||| | || || | ||| | || | | Sbjct 4859 ACAATACGCCTATTGGATCGTTGTAAACTATCGTGAAGCATACGATATGTATGCATGCAA 4800 Query 161473 TGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGAT 161532 |||||| | ||||| ||||| |||||||| | ||| ||||| ||||| | ||||| Sbjct 4799 TGGTATCTTGTTCAATCATGAATCACCACGTAGAGGTCCAACTTTTGTAACTAGAAAGAT 4740 Query 161533 TACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCT 161592 ||| | | | ||||| || | | || ||| ||| | |||||| | Sbjct 4739 CACTCGTTTCGTTGCTGGTATTGCATGTGGTAAAGATGAAATTCTCTACTTGGGTAATAT 4680 Query 161593 AAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTT 161652 || | | ||| ||||||||||||||| ||| ||||| ||||| |||||||| ||||| Sbjct 4679 CAATGCTAAACGTGATTGGGGTCATGCTAGAGATTATGTCGAGGCAATGTGGTTAATGTT 4620 Query 161653 ACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAA 161695 |||||| || | || || || | || || ||||| ||| || Sbjct 4619 ACAACAAGAGAAACCAGAGGATTTCGTTATCGCCACTGGTGAA 4577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729901214862680