Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2826 163 4e-35 seq316 138 2e-27 >seq2826 Length=2534 Score = 163 bits (180), Expect = 4e-35 Identities = 565/869 (65%), Gaps = 13/869 (1%) Strand=Plus/Plus Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 || || ||||| |||||||| | |||| | || ||||| || || || || || Sbjct 1206 GAGGCGAGATTGCAAACTGCAATTTCATCTGGTGATGTGTATTGAATGATTTCAGTGCAA 1265 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 |||||||||| | || || || |||||||| ||||| || || || |||||| Sbjct 1266 AGATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGATTTGGAATTGCAAGCGTCC 1325 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456 || || | || || || ||||||||||||| || ||||| ||||| | ||||| Sbjct 1326 TTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCCATAATGGCGAACCAAAGT 1385 Query 69457 ACCCTAGCATTTATTACG-GTCTTGTAACG-CTTCTCTTTT-TCATATTGTGTATATAGC 69513 | || || ||||| |||||| | | || | || ||||| | | || || Sbjct 1386 TCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGGTGTTGCCTCATACTTTAAGTAGAGG 1445 Query 69514 CGTTCGAATTCATCTCCCCAAACA---TCATCCAATCCAGGACATTCATTTGGACACATC 69570 | ||| | ||| || | ||| | | || || ||| |||||||| | Sbjct 1446 -GCACGATGT--TCTTGGGAATGAGTTTCAGCGAGACCGGGTGCTTCGTTTGGACAAAAG 1502 Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630 | |||||| || ||| | | || || | |||||| | ||| || ||| || || Sbjct 1503 AGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTAACCCAGAGGGC- 1561 Query 69631 ATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAA 69689 ||| || |||||||| | ||| | || || || || || ||||| || ||||||| ||| Sbjct 1562 ATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTTTTCTTGAGATCGATAAA 1621 Query 69690 CTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATT 69749 ||| | | ||| | ||||||||| || | |||| || | | | ||| || ||| Sbjct 1622 CTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGGCACCCTTTCTTTTGCC 1681 Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 || || ||||| | ||| | || || | ||| | || | ||||| || | | ||| Sbjct 1682 ACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAAGCATTGGTACCAAACC 1741 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| | ||||| || ||| |||||||||| || ||||| ||| | | Sbjct 1742 ATTGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGCACGAATTTTATGTACGGC 1801 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || | || || || | ||||| ||||||| |||||||| || Sbjct 1802 AACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGTTTCAAGGTGTCATAGAT 1861 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTAT 69989 ||| || || ||| || |||| | || | ||||| ||||||||| || || | Sbjct 1862 ACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACATGAAGACATTTG-TGGTGAAG 1920 Query 69990 A-GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 || || || || |||||||| || | || || ||||| ||| || || || | Sbjct 1921 GTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAATAGTTTCTCCGATAGACGTC 1980 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108 || || | || || || || || ||| ||| || || || | |||||||||| Sbjct 1981 GATAGGTGTTGATCGCAGACTCAATGTCCTCGCCATGGATACCAATGGAAACACGCATCA 2040 Query 70109 ACATATGCTGAGGTCGTTCTACCGTTTTA 70137 ||||||| || || || ||||| ||||| Sbjct 2041 ACATATGTTGTGGACGCTCTACAATTTTA 2069 Score = 123 bits (136), Expect = 3e-23 Identities = 357/541 (66%), Gaps = 10/541 (2%) Strand=Plus/Plus Query 68404 GTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTT 68463 ||||| |||||||||||||| || || | |||| |||| || || ||||| Sbjct 300 GTACGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAG 359 Query 68464 GTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATG 68523 || ||||||| | | |||| || || || || || | |||||||||||| ||| Sbjct 360 GTGAGTTTGGCAAAGGTTGGTTCAGCGATGAAAACGTTGAAACTTTGACTTTGATCAATG 419 Query 68524 AAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTC 68583 ||||| || | ||| || ||||| | || | | | ||||| |||||||||||| || Sbjct 420 AAAGCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGACGAATTTCCCAAACGGTT 479 Query 68584 TTAAAAATCTGTTTGATATCATCTGGAA-GGCTCGTAT--TTTGAATGGATCCACCATCG 68640 ||| | | | ||| | |||||||||| | | | || ||| || || |||| | Sbjct 480 TTATAGAGTTCTTTCAATTCATCTGGAATGCCACCAATGGATTGGATTGAACCACGTGCT 539 Query 68641 GATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAA--CTCTAA 68698 | || ||| |||||| ||||| |||| ||| | | | ||| | ||| || Sbjct 540 GCAATGATTTGATTCTTCATCTCTGGTGTCCA-AATACCCAATTCCATAAGATCCTCCAA 598 Query 68699 GGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTAC 68758 | || ||| || || ||| || |||| || || | |||| ||||||| || Sbjct 599 -CAATTGTTTATTGACGATAGTAAACTCACCAGCCAATACACGACGACTGTAAATGTTTG 657 Query 68759 TGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCA 68818 || |||||||| | |||| || || || || |||||| |||||| || ||||||| Sbjct 658 AAGTGTATGGTTCAAAGCATTCGTTGTTACCAAGGATTTGACTAGTTGAAGCGGTTGGCA 717 Query 68819 TAGGTGCCACCAATAAACTATTTCTAAGACCA--TGTGTT-ATGATTTTATCTTTTAGAT 68875 | ||||| | || | || | | |||| | | || | ||| ||||||||||| | Sbjct 718 TTGGTGCAATTAAGAGGGAGTTACGTAAACCACCTTTATTGACGATCTTATCTTTTAGGT 777 Query 68876 GTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGT 68935 | ||||| |||| | | ||| || ||||| | ||||||||| || || || | Sbjct 778 CTGCCCAATTCCAACGTGAACTTGGAGTCACTTTCCACATATCGTATTGAAGGATACCTT 837 Query 68936 T 68936 | Sbjct 838 T 838 >seq316 Length=22015 Score = 138 bits (152), Expect = 2e-27 Identities = 209/296 (71%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || || |||||||||| || ||||| | ||| ||||| || |||||||| | Sbjct 20784 CAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAAA 20725 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||||| ||| | |||||| | |||||| || | | |||| ||| || || Sbjct 20724 CCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAAAT 20665 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC---GTAACTTGTATCATTATGT 39793 || || || ||||||||||||||||| | | ||| | || ||| ||||||| Sbjct 20664 ATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATTTGAATCATTA--- 20608 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| | |||||| || || ||||| || ||||| || |||||||| || |||||| Sbjct 20607 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGCATTA 20548 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 || | | || ||| | ||||||||| ||| || || ||||| ||||| || Sbjct 20547 AATAATTTATCTTTAGTTTGTTTATCTTTAATATAAGTTTCAATTAAAAGACTTTA 20492 Score = 122 bits (134), Expect = 1e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 ||||| |||| ||||| || |||||||| || || ||||| || || |||||||||||| Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || | ||||||||| || || |||||| || | ||||||||| || || |||||| Sbjct 20337 TCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATCA 20278 Query 40025 CTAGCGGCAAAAAATGCCAATACATGT 40051 || |||||||||||||| |||||| Sbjct 20277 GATGCAGCAAAAAATGCCAAAACATGT 20251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686882087834040