Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq316 145 6e-30 seq986 87.8 1e-12 >seq316 Length=22015 Score = 145 bits (160), Expect = 6e-30 Identities = 216/299 (72%), Gaps = 12/299 (4%) Strand=Plus/Plus Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAAT 44047 || |||||| | || || || || || |||||| || || || ||| |||||| Sbjct 20492 TAAAGTCTTTTAATTGAAACTTATATTAAAGATAAACAAACTAAAGATAAATTATTTAAT 20551 Query 44048 GCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106 || || |||||| | || || | ||||| | || ||||| ||||| | | |||||| || Sbjct 20552 GCAATTGAAACAATTCCATGTG-TTAAAAAGAAGGCAGAATGGGCATTAAGATGGATTAA 20610 Query 44107 T---TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 | |||||| || |||| |||||| | || || ||||||| || || || || || Sbjct 20611 TGATTCAAAT---TCATTTGCAGAACGTTTGGTTGCATTTGCAGCAGTTGAGGGTATATT 20667 Query 44164 CTTTTCAG-GATCGTTTGCGGCCA-TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221 |||||| | | |||| | || | |||||||| || || ||||||| ||||| || Sbjct 20668 --TTTCAGTGGTAGTTTTTGTTCAATTTTTTGGTTGAAAAAGAGAGGTTTAATGCCAGGT 20725 Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 || || ||||||||||| || || ||||||||||| |||||||| ||||||||||| Sbjct 20726 TTAACATTTTCAAATGAATTGATTTCACGTGATGAAGGTTTACATTGTGATTTTGCTTG 20784 Score = 107 bits (118), Expect = 2e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||| ||||||||||| || || || || ||||||||| | | | | | ||| Sbjct 20255 GTTTTGGCATTTTTTGCTGCATCTGATGGTATTGTTAATGAAAATCTTGCAACTAGATTT 20314 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | ||||| ||| | ||||||||| ||||||| ||||| ||||||||||| || ||| Sbjct 20315 ATGTCTGAAGTACAAATTCCAGAAGCAAGATGTTTCTATGGTTTTCAAATTGCAATTGAA 20374 Query 43970 AATATTCATTCGGAAANNTACAG 43992 ||||| ||||| |||| || || Sbjct 20375 AATATACATTCTGAAACCTATAG 20397 >seq986 Length=8422 Score = 87.8 bits (96), Expect = 1e-12 Identities = 239/365 (65%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT--- 19605 || || ||||| || | ||||| ||||| ||||| ||||| | |||||| | Sbjct 1778 TTACATATTATTATTTTCGATGAGTTGGATGCAATTTGTAAATCTCGTGGTTCTAGACAA 1837 Query 19606 -GTAAAT--GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 || | | || || ||| | ||||| |||||| | | ||| | || |||||| Sbjct 1838 GGTGATTCAGGTGTTGGTGATTCAGTTGTAAATCAATTGTTAGCAATGATTGATGGTGTT 1897 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | | |||||||||||||||| ||||| ||||| |||||| ||| | || || Sbjct 1898 GAATCATTGAATAATATTTTAGTAATTGGTATGACCAATAGAAAGGATATGATTGATGAA 1957 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || ||| | || || ||||| ||||| || | | |||||| ||||| |||||| Sbjct 1958 GCTTTACTTCGTCCAGGTCGTTTGGAGGTACATGTTGAAATTTCATTACCAGATGAACAC 2017 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 || | | |||| || || || |||||| ||| ||| || | | || ||| || Sbjct 2018 GGTAGAGAACAAATCTTTAAGATTCATACAGCAAAAATGAGAGATCAAAATGCTTTGGAT 2077 Query 19843 GACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTT 19902 | ||||| ||||| | ||| | |||| ||| ||||| || || ||| || Sbjct 2078 AAAGATGTTGATCTCGCCTCTTATGCTCATACCACCAGAAATTATAGTGGTGCTGAAATT 2137 Query 19903 GAGGG 19907 ||||| Sbjct 2138 GAGGG 2142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440930331555