Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2826 181 1e-40 seq1790 98.7 1e-15 seq117 93.3 5e-14 >seq2826 Length=2534 Score = 181 bits (200), Expect = 1e-40 Identities = 1125/1772 (63%), Gaps = 72/1772 (4%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 || ||||||||||| || ||||| | |||| ||||| | || | ||||| || | | Sbjct 303 CGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAGGTG 362 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 || |||| | ||||| | ||||| | ||| | |||||||||||| |||||||| Sbjct 363 AGTTTGGCAAAGGTTGGTTCAGCGATGAAAACGTTGAAACTTTGACTTTGATCAATGAAA 422 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTAATTTCCCAAACTGTGCG 110541 || || | || ||||||||||||| | | ||| | |||||||||||| || Sbjct 423 GCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGACG-AATTTCCCAAACGGTTTT 481 Query 110542 ATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTT 110601 |||||| | || | |||||||| || | || ||||| ||||| | || | Sbjct 482 ATAGAGTTCTTTCAATTCATCTGGAATGCCACCAATGGATTGGATTGAACCACGTGC-TG 540 Query 110602 CACCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGAC 110658 || |||| ||| |||||| || | ||| | ||| | | | | || || | | Sbjct 541 CA--ATGATTTGATTCTTCATCTCTGGTGTCCAAATACCCAATTCCATAAGATCCTCCAA 598 Query 110659 GAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718 | || || ||||| || ||||||||| || | | | ||| ||||||| Sbjct 599 CAATTGTTTATTGACGATAGTAAACTCACCAGCCAATACACGACGACTGTAAATGTTTGA 658 Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778 |||||||||||||||||||| || ||||| | |||||| || || || |||||||| Sbjct 659 AGTGTATGGTTCAAAGCATTCGTTGTTACCAAGGATTTGACTAGTTGAAGCGGTTGGCAT 718 Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATG--CGT-TCCTTGAGAAC 110835 |||||| || || || |||||| | ||| | |||| | | | || || || | Sbjct 719 TGGTGCAATTAAGAGGGAGTTACGTAAACCACCTTTATTGACGATCTTATCTTTTAGGTC 778 Query 110836 ATCCCAGT-CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTT 110894 |||| | | | ||| ||||| |||| |||| |||| || | ||||| | |||| Sbjct 779 TGCCCAATTCCAACGTGAACTTGGAGTCACTTTCC-ACATATCGTATTGAAGGATACCTT 837 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954 ||| || || || || | || | ||||| | ||| | | ||||||||| Sbjct 838 TGGATGCTGGTGAGCCTTGGAAAGACTCATATGGACCATCACGTAGTGCCAATTCATGAG 897 Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014 || || | |||| ||| ||||||||| ||| | |||| | | ||| Sbjct 898 AGGCGGTCAAAGCTGCGAAATAGATGGTTTCAGCGATTTCAACATTTAATTTAGCGGCGG 957 Query 111015 CATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCC 111073 || | |||||| | | | ||| ||| || ||||| || | |||||| | ||| Sbjct 958 CAACACTATCAAAAG-GCATACGCATTTGAATGAAAACATCGGCTAAACCTTGGATACCA 1016 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 111133 | |||||| || | |||| | ||| || || || | || |||||||| || Sbjct 1017 ATACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCCTCGACCACAGGATAAAAGTTA 1076 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193 | ||||||| ||| ||||| || | | ||| ||||||||| || || | Sbjct 1077 CGATCAATGATAACGTTGAGATTGACAGTGATCAACTTGGTGATTTCAAAGAGGAATTGA 1136 Query 111194 TAATCAAAAG----------TG---CGAGT---CTCTTCATT-GAC--AT--ACTTTGGA 111232 | |||||| || || | | | || || ||| || | |||||| Sbjct 1137 TGATCAAACTCCTTCTCTTTTGGATCGGTTGAACCCGTCTTTTGACGAATGAATTTTGGA 1196 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 ||||| ||||| || | ||||||||| || | ||||| |||||| | | ||| Sbjct 1197 AGGGCAATTGAGGCGAGATTGCAAACTGCAATTTCATCTGGTGATGTGTATTGAATGATT 1256 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || || || | || ||| |||| || || | ||| | ||| || || ||| Sbjct 1257 TCAGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGATTTGGAATTG 1316 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || || ||||| || | ||| | || || || || || ||||||| | ||| || Sbjct 1317 CAAGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCCATAATGGCG 1376 Query 111413 TTCCAAACATCGGCGGCTGG---TACAA---TGGCGTTGGCCCGTCCCTCCGCCTCGTAC 111466 ||||| || ||| |||| | ||| | | || ||||| ||| Sbjct 1377 AACCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGGTGTT---GCCTCATAC 1433 Query 111467 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526 ||| ||||||||| | || | | || | |||||| ||||| | || | Sbjct 1434 TTTAAGTAGAGGGCACGATGTTCTTGGGAATGAGTTTCAGCGAGACCGGGTGCTTCGTTT 1493 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 ||||| || || ||||| | |||| || || || |||| ||| || | || || | Sbjct 1494 GGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTAACC 1553 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 || |||| | || ||||||||| | ||| || | || ||| || | | Sbjct 1554 CAGAGGGCATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTTT-TCTTGAG 1612 Query 111647 -TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 || | ||||| | || ||| || ||||||||||| | || || || | | ||||| Sbjct 1613 ATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGGCACCCTT 1672 Query 111706 TCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 || ||| || |||||| || || || || || | || || || ||||||||||| Sbjct 1673 TCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAAGCATTGG 1732 Query 111763 AATAATACCATCTGATTGA-CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 111821 | | ||||| || | | ||||| || || |||||| | || | ||| | | | Sbjct 1733 TACCAAACCAT-TGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGCACGAATTT 1791 Query 111822 CATGGATGTGCATC-CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 ||| | | ||| | |||||||| || || | |||||| || ||||| | | | Sbjct 1792 TATGTACG-GCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGTTTCAAG 1850 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTG-TTGGCGATAAGGAAGCAAC-TG--GA 111936 || |||||||||| | |||||| |||||||| || | || ||| ||| || || Sbjct 1851 GTGTCATAGATACCATCGATTGAATCCTCCTTCATTTG----AACCAAGAAACATGAAGA 1906 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA-TAC 111995 ||| || ||| ||||||||||| ||||| | |||||||| || || |||| | | Sbjct 1907 CATTTGTGGTGAAGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAATAGTTT 1966 Query 111996 CTTGG---GACATCTTGTCG-TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 || | ||| |||| || || | | |||| |||||||| || || ||||| Sbjct 1967 CTCCGATAGAC-----GTCGATAGGTGTTGATCGCAGACTCAATGTCCTCGCCATGGATA 2021 Query 112052 CCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || || | || ||||| ||||| | ||||| Sbjct 2022 CCAATGGAAACACGCATCAACATATGTTGTGG 2053 >seq1790 Length=4853 Score = 98.7 bits (108), Expect = 1e-15 Identities = 268/407 (66%), Gaps = 15/407 (4%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTG---CT 11596 || |||||||| || | || |||||| | || | ||| | |||||||||| | Sbjct 1615 AAACCATCCATTTCAACCAATAGTTGATTTAGAGTGTTTTCACGTTCATCATTTGAACCA 1556 Query 11597 GGCATACCACCAGCACTGCGTTGCT-TGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | | |||||| || | ||||| | || | ||||| || ||||||||||| ||||| Sbjct 1555 GAGAAACCACCTTTACCTC-TTGCTCTACCAATTGCATCGATTTCATCAATGAATACAAT 1497 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 ||||||| ||| | | || |||||| | ||| | ||| | | | ||| ||||| Sbjct 1496 ACATGGTGCATTCTTTCTTGCTTGTTCAAATAAATCTCTAACACGTGATGGACCAACACC 1437 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG-----ATGAATGGGACATTTGAT 11770 |||||||||||| || || | || | |||| | | |||||| ||||||| | Sbjct 1436 AACAAACATCTCTACGAAATCTG-----AACCACTCGTTGAAAAGAATGGTACATTTGCT 1382 Query 11771 TCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGG 11830 ||||| ||| | ||| ||| | | || || || |||||||| || | | || Sbjct 1381 TCACCTGCGGTTGCTTTGGCAATCAATGTTTTACCTGTACCTGGTGGTCCAACTAAAATT 1322 Query 11831 GCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCC 11890 || |||| || ||||| || ||| | || || ||| || | ||| | ||| | Sbjct 1321 GCACCTCTTGGTATCTTTGCTCCAATGTCATGGAATTTCTTTGGATTCTTTAAAAAGTTT 1262 Query 11891 ACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATC 11937 |||| ||||||| || |||| || | ||| || ||||||| Sbjct 1261 ACAAATTCTTCAATCTCTACTTTTGCTTCACCAAGTCCTGCAACATC 1215 >seq117 Length=39445 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/189 (74%), Gaps = 10/189 (5%) Strand=Plus/Plus Query 27858 TACTTAGACCAACAAATCCATATTCAGCATCAAAAGCGGCGGCCGAAATGATAGTCCGTT 27917 |||||| |||||| ||||||||||||||| ||||||| || ||| |||| | | Sbjct 5804 TACTTAAACCAACGAATCCATATTCAGCAAGTAAAGCGGGAGCAGAACATTTAGTTCAAT 5863 Query 27918 CATAT-ATAGAATCATTTGATATGAATATCAA-AATAATTCGCTGTAATAATGTTTATGG 27975 ||||| ||| |||||||| | || | | ||| ||||| | |||||| ||||||| Sbjct 5864 CATATTATA-AATCATTTAA-ATTACCAACAATAATAACCAGAGCAAATAATATTTATGG 5921 Query 27976 TCCAAATCAATACCCGGAGAAACTCATTCCAAAGTTTATAA---GACTTTTGAAAGAGGA 28032 |||||| ||||| || || || | || ||||| ||||||| |||||| ||| | | Sbjct 5922 TCCAAAACAATATCCTGAAAAGATTATACCAAAATTTATAAATCAACTTTT-AAATA--A 5978 Query 28033 TAAAAAGTG 28041 |||||| || Sbjct 5979 TAAAAAATG 5987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628007577405600