Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2826 165 1e-35 seq1790 95.1 1e-14 seq2472 84.2 3e-11 >seq2826 Length=2534 Score = 165 bits (182), Expect = 1e-35 Identities = 1064/1676 (63%), Gaps = 66/1676 (4%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || || |||||||| || ||||| | || | |||||| | ||| | |||||||||| Sbjct 303 CGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAGGTG 362 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | |||||| | ||||| | ||| | |||||| |||||| ||||| Sbjct 363 AGTTTGGCAAAGGTTGGTTCAGCGATGAAAACGTTGAAACTTTGACTTTGATCAATGAAA 422 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTCCT 118015 || ||||| || ||||||||||| | | | ||| | |||||||| || || | Sbjct 423 GCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGAC-GAATTTCCCAAACGGTTTT 481 Query 118016 GTAGAGGTTCTT--AATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| |||||| ||| |||||||| || | | || |||||| || |||| || Sbjct 482 ATAGA-GTTCTTTCAAT-TCATCTGGAATGCCACCAATGGATTGGATTGAACCACGTGC- 538 Query 118074 TTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 118130 || | |||| ||| |||||| || || ||| | ||| | | | ||||||||| Sbjct 539 -TG-CAATGATTTGATTCTTCATCTCTGGTGTCCAAATACCCAATTCCATAAGATCCTCC 596 Query 118131 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 | | || |||||||| | | ||||||||| || | || | || || || Sbjct 597 AACAATTGTTTATTGACGATAGTAAACTCACCAGCCAATACACGACGACTGTAAATGTTT 656 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | |||||||| |||||||| || |||||||| | |||||| || || || || ||| Sbjct 657 GAAGTGTATGGTTCAAAGCATTCGTTGTTACCAAGGATTTGACTAGTTGAAGCGGTTGGC 716 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGAC--CCTTT-TCCCTAATGCGTTCCTTGAGA 118307 || ||||| || | ||| |||||| | || ||||| | || || || || Sbjct 717 ATTGGTGCAATTAAGAGGGAGTTACGTAAACCACCTTTATTGACGATCTTATCTTTTAGG 776 Query 118308 GC-GTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 118366 | | || | || | ||| ||| | | | | | ||||||||| | || |||||||| Sbjct 777 TCTGCCCAATTCCAACGTGAACTTGGAGT-CACTTTCCACATATCGTATTGAAGGATACC 835 Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC-GG 118425 || ||| ||||| || || | || | ||||||||| || ||| |||||||| | Sbjct 836 TTTGGATGCTGGTGAGCCTTGGAAAGACTCATATGGACCATCACGTAGTGCCAATTCATG 895 Query 118426 AGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGG 118485 || || | |||||| ||| || |||||| || | |||| | | || Sbjct 896 AG-AGGCGGTCAAAGCTGCGAAATAGATGGTTTCAGCGATTTCAACATTTAATTTAGCGG 954 Query 118486 CCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACAC 118545 | | | |||||| | | || ||| || ||||| || | |||||||| || Sbjct 955 CGGCAACACTATCAAAAGGCATACGCATTTGAATGAAAACATCGGCTAAACCTTGGATAC 1014 Query 118546 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAAT 118605 | | |||||||| |||||||| | ||| || | ||| |||| |||||||| | Sbjct 1015 CAATACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCCTCGACCACAGGATAAAAGT 1074 Query 118606 TCCTATC---GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 118662 | | ||| |||||| || ||||| |||| | ||| ||||||||| || Sbjct 1075 TACGATCAATGATAAC---GTTGAGATTGACAGTGATCAACTTGGTGATTTCAAAGAGGA 1131 Query 118663 TTTCGTAATCAAA--ACTGC-------GA---GT----CTCTTC-ATTGAC--AT--ACT 118701 || | |||||| || | || || | | || ||||| || | | Sbjct 1132 ATTGATGATCAAACTCCTTCTCTTTTGGATCGGTTGAACCCGTCTTTTGACGAATGAATT 1191 Query 118702 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA-GTGTACTCT 118760 | |||||||| ||||| || ||||| || || | | |||| || | | ||||| | Sbjct 1192 TTGGAAGGGCAATTGAGGCGAGATTGCAAACTGCAATTTCAT-CTGGTGATGTGTATTGA 1250 Query 118761 ATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 118820 || ||||| ||||| | || ||| ||||||| || | || | |||||| || || Sbjct 1251 ATGATTTCAGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGATTTG 1310 Query 118821 GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 118880 | || || || ||||| || | ||| |||| || || || || ||| || | | | Sbjct 1311 GAATTGCAAGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCCATA 1370 Query 118881 ATAGCCTTCCAGA---CATCGGC--AGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTT-C 118933 || || ||| | | | || | | ||| | ||| | || | | || | Sbjct 1371 ATGGCGAACCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGG----TGTTGC 1426 Query 118934 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 118993 ||| |||||| ||||||||| | |||| | || | ||| || ||||| Sbjct 1427 CTCATACTTTAAGTAGAGGGCACGATGTTCTTGGGAATGAGTTTCAGCGAGACCGGGTGC 1486 Query 118994 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTC 119053 | | ||| || ||||| ||||| | |||| | || || |||| ||| |||| || Sbjct 1487 TTCGTTTGGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATC 1546 Query 119054 TGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGA 119112 | |||||| || |||| ||||| | | | | || || | | || || || Sbjct 1547 ACTAACCCAGAGGGCATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTTTT 1606 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172 | | || | ||| || | || ||| || ||||| || |||| ||| || || | | Sbjct 1607 CTTG-AGATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGG 1665 Query 119173 ACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAA 119229 ||||| | | |||| | || | || || | || || | || || ||||||| Sbjct 1666 CACCCTTTCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAA 1725 Query 119230 GCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTC 119289 ||||||| | | ||||| | |||||| || || |||||| | | | ||| | Sbjct 1726 GCATTGGTACCAAACCATTGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGCAC 1785 Query 119290 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 119349 | | || | | | ||||||||| || || | |||||| || || || | Sbjct 1786 GAATTTTATGTACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTGTT 1845 Query 119350 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTC 119408 | | || | ||||| |||||||| || || |||| ||||| | | ||| || Sbjct 1846 TCAAGGTGTCATAGATACCATCGATTGAATCCTCCTTCATTTG-AACCAAGAAACATGAA 1904 Query 119409 GACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 |||||||| || ||||||||||||||||| | |||||||| || || |||| Sbjct 1905 GACATTTGTGGTGAAGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAA 1960 >seq1790 Length=4853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/201 (72%), Gaps = 7/201 (3%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCG---CA 14209 || |||||||| ||| ||| |||||||| | || | ||| ||||||||||| | || Sbjct 1615 AAACCATCCATTTCAACCAATAGTTGATTTAGAGTGTTTTCACGTTCATCATTTGAACCA 1556 Query 14210 GGCATACCACCCGCACTGCGTTGCT-TACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 | | |||||| || | ||||| |||| | || || |||||||| ||||| || || Sbjct 1555 GAGAAACCACCTTTACCTC-TTGCTCTACCAATTGCATCGATTTCATCAATGAATACAAT 1497 Query 14269 ACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTC-TCTTGGCACCGACAC 14327 ||||||| ||| | | || |||||| | ||||| || | | ||| ||| |||| Sbjct 1496 ACATGGTGCATTCTTTCTTGCTTGTTCAAATAAATCTCTAACACGTGATGG-ACCAACAC 1438 Query 14328 CCACAAACATCTCCACAAAAT 14348 | ||||||||||| || |||| Sbjct 1437 CAACAAACATCTCTACGAAAT 1417 >seq2472 Length=3280 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 33309 AATAATGTATATGGCCCAAATCAATATCCGGAAAAACTCATTCCAAAGTTTATACGACTA 33368 |||||||| ||||| || || ||||||| |||||||| |||||||| ||||| || Sbjct 2585 AATAATGTGTATGGTCCCAAACAATATCATGAAAAACTAATTCCAAAATTTATCAATTTA 2644 Query 33369 CTGAAAAATAATGAGAAATGTACAATTCATGGCACA 33404 | ||| ||||| ||||||||||||||||| ||| Sbjct 2645 TTATCAAAAAATGAAAAATGTACAATTCATGGTACA 2680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618411150601160