Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2826 242 4e-59 seq1790 116 4e-21 seq2563 96.9 4e-15 seq2472 95.1 1e-14 >seq2826 Length=2534 Score = 242 bits (268), Expect = 4e-59 Identities = 1141/1779 (64%), Gaps = 86/1779 (5%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||||| ||||| || |||| ||||| ||||| || |||||||| |||| Sbjct 2053 CCACAACATATGTTGATGCGTGTTTCCATTGGTATCCATGGCGAGGACATTGAGTCTGCG 1994 Query 104282 TTGGAGACATA-CGACAAGATGTC---CCAAGGTA-TGTTCATTCACGCAACACCAACCC 104336 | | || || |||| ||| | || | | |||| || || |||||||| Sbjct 1993 ATCAACACCTATCGAC-----GTCTATCGGAGAAACTATTCACACATGCCACACCAACAT 1939 Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTC--CA-GTTGCTTCCTTATCGCCAAC- 104392 | ||||| ||||||||||| ||| |||||||| || ||| ||| || | || Sbjct 1938 TATTCAACGCTGGTACACCTTCACCACAAATGTCTTCATGTTTCTTGGTT----CAAATG 1883 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 |||||||| |||||| | |||||||||| || | | | ||||| || |||||| Sbjct 1882 AAGGAGGATTCAATCGATGGTATCTATGACACCTTGAAACAATGTGCATTGATTTCAAAG 1823 Query 104453 TGGGCTGGGGGTATTGG-GATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 104511 | || || |||||||| | ||| | | ||| | | | ||| | || | |||||| Sbjct 1822 AGTGCCGGTGGTATTGGTGTTGC-CGTACATAAAATTCGTGCCGCTCAAAGTTATATTCG 1764 Query 104512 GGGGACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 104570 || || ||||| | | || ||||| | | ||||||||||| || || || | || | Sbjct 1763 TGGTACCAATGGCACTAGCA-ATGGTTTGGTACCAATGCTTCGTGTTTTCAATGATACCG 1705 Query 104571 CGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGC 104627 | || || || |||||| ||| | ||||||| | | || || || | |||| Sbjct 1704 CTCGTTACGTCGATCAAGGTGGTGGCAAAAGAAAGGGTGCCTTTGCCGTATACTTGGAGC 1645 Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGG---TGACGAGG 104684 ||||||| || ||| || | ||||| | || |||||| || || | ||| Sbjct 1644 CATGGCATGCCGATGTCTTTGAGTTTATCGA------TCTCAAGAAAAACACTGGCAAGG 1591 Query 104685 AGGCGCGGTGCC---GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741 ||| | | | | ||||| |||| || |||||| || ||| |||| ||| || Sbjct 1590 AGGAGATGAGAGCTAGAGATCTATTCTATGCCCTCTGGGTTAGTGATATCTTTATGGAGC 1531 Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG 104801 | || || | | ||| ||||||| |||||||||||| || | ||||| |||||| | | Sbjct 1530 GTGTCGAACAAAATGGTGATTGGTCACTCTTTTGTCCAAACGAAGCACCCGGTCTCGCTG 1471 Query 104802 ATGC-CGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGG-AAGA----AGGTC 104855 | | | | || | | | ||||| ||| |||||| |||| || | | || Sbjct 1470 AAACTCATTCCCAAGAACATCGT-GCCCTCTACTTAAAGTATGAGGCAACACCAGACCTC 1412 Query 104856 GGGCGAC-TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACC 104914 | ||| || | | ||| || | ||| || ||| | | || ||| Sbjct 1411 GCAAGACGTGTAA---TCAAAGCACAAGAACTTTGGTTCGCCATTATGGAATCACAAGTT 1355 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAA--CCAAAAGAGTAATCAAA 104972 || ||||||||||||| ||| | || || ||||| || || ||||| |||||| Sbjct 1354 GAAACTGGTACACCATTCATCTTGTATAAGGACGCTTGCAATTCCAAATCC--AATCAAC 1297 Query 104973 AGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACA 105032 | ||| | ||| || | ||| ||||| || || |||||| | ||| ||| Sbjct 1296 AAAATCTCGGTACCATTAGTAGTAGTAATCTTTGCACTGAAATCATTCAATACACATCAC 1237 Query 105033 AAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAG 105092 |||||| | || || || || ||||| ||||| || || || || | | || | Sbjct 1236 CAGATGAAATTGCAGTTTGCAATCTCGCCTCAATTGCCCTTCCAAAATTCATTCGTCAAA 1177 Query 105093 AGAC----------------AAAGACA-----TTTGATTATGAAAAACTCCACGAAGTTA 105131 |||| ||||| | |||||| || || ||| ||| | | Sbjct 1176 AGACGGGTTCAACCGATCCAAAAGAGAAGGAGTTTGATCATCAATTCCTCTTTGAAATCA 1117 Query 105132 CGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGA 105191 | || |||| || || ||| | |||||| | || ||||| || || | Sbjct 1116 CCAAGTTGATCACTGTCAATCTCAACGTTATCATTGATCGTAACTTTTATCCTGTGGTCG 1057 Query 105192 CTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGG 105251 ||| | || ||| | ||||| |||||||||||| | ||| | || ||| | || | Sbjct 1056 AGGCTAAAACTTCAAATCTTAGACATCGTCCAATTGGTATTGGTATCCAAGGTTTAGCCG 997 Query 105252 ATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGC 105311 |||| ||||||| || | |||||| | | || || | |||| Sbjct 996 ATGTTTTCATTCAAATGCGTATGCCTTTTGATAGTGTTGCCGCCGCTAAATTAAATGTTG 937 Query 105312 GCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGT-TCA-GAGTTGGCAGAGGT 105369 || ||| ||||| ||| ||| ||| |||| || | ||| || |||||| Sbjct 936 AAATCGCTGAAACCATCTATTTCGCAGCT-TTGAC-CGCCTCTCATGAATTGGCACTACG 879 Query 105370 TGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGA 105429 ||||||||||||||| | || | || || ||||| || |||| | ||||||| || Sbjct 878 TGATGGTCCATATGAGTCTTTCCAAGGCTCACCAGCATCCAAAGGTATCCTTCAATACGA 819 Query 105430 TATGTGGGAAGGTGAGACCAAGCTTCACTACG--ACTGGGAAGCTCTCAAGGA-ACG--C 105484 ||||||| ||| ||| ||||| ||||| | | |||| || || || || | | | Sbjct 818 TATGTGGAAAG-TGACTCCAAG-TTCACGTTGGAATTGGGCAGACCTAAAAGATAAGATC 761 Query 105485 ATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACC 105544 |||| | ||| | |||||| ||| | || || ||||||||||| || || || Sbjct 760 GTCAATAAAGGTGGTTTACGTAACTCCCTCTTAATTGCACCAATGCCAACCGCTTCAACT 701 Query 105545 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGA 105604 |||||| | ||||| || |||||||||||||| ||||| | ||||| || | Sbjct 700 AGTCAAATCCTTGGTAACAACGAATGCTTTGAACCATACACTTCAAACATTTACAGTCGT 641 Query 105605 AGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAG 105664 | | || || |||||| || ||||| || || | |||| || || | || Sbjct 640 CGTGTATTGGCTGGTGAGTTTACTATCGTCAATAAACAATTGTTGGAGGATCTTATGGAA 581 Query 105665 ATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAA 105724 | ||| | ||| | || |||||| ||| || | ||| ||||||| || ||| Sbjct 580 TTGGGTATTTGGACACCAGAGATGAAGAATCAAATCATTGCAGCACGTGGTTCAATCCAA 521 Query 105725 AATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAG 105784 |||| | |||||| ||||| | || | | || || ||||||||||| | Sbjct 520 TCCATTGGTGGCATTCCAGATGAATTGAAAGAACTCTATAAAACCGTTTGGGAAATTC-G 462 Query 105785 ATGAAGGA-TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAG 105843 ||| | | ||||||| |||||||| ||||||||| |||||||||||||||||||| Sbjct 461 TCAAAGAACTCTCATTGATATGGCCGCTGATCGTGGTGCTTTCATTGATCAAAGTCAAAG 402 Query 105844 TATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAG 105903 | | || | ||||| | ||||| | |||| ||| | || |||||| | || Sbjct 401 TTTCAACGTTTTCATCGCTGAACCAACCTTTGCCAAACTCACCTCAATGCACTTTTATTC 342 Query 105904 TTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCG 105942 ||||||||| ||| | || || || ||||| || || || Sbjct 341 TTGGAAGAAAGGTTTAAAGACTGGTATGTACTATCTTCG 303 >seq1790 Length=4853 Score = 116 bits (128), Expect = 4e-21 Identities = 330/499 (66%), Gaps = 11/499 (2%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 ||| || | |||||| | ||| | || | ||| | |||||| | ||| || || || Sbjct 1703 ATCGAATCTACCTGGTCTAAGTAATGCTTTATCCAAGATATCGGGTCTATTGGTGGCAGC 1644 Query 9586 GATGACAACAATACCTGTTTCATTA--TCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | |||||||| | | ||||| | | ||||||||||| || ||| ||||| || Sbjct 1643 CAAGACAACAACA--TTTTTCAATGGTTTGAAACCATCCATTTCAACCAATAGTTGATTT 1586 Query 9644 ATAGTTTGTTCCCGTTCATCATTCG---CTGGCATACCACCAGCACTGCGTTGCTTTCCC 9700 | ||| | ||| ||||||||||| | | | | |||||| || | ||||| | || Sbjct 1585 AGAGTGTTTTCACGTTCATCATTTGAACCAGAGAAACCACCTTTACCTC-TTGCTCTACC 1527 Query 9701 ACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 9759 | ||||| || ||||||||||| || || |||||| ||| | | || |||||| Sbjct 1526 AATTGCATCGATTTCATCAATGAATACAATACATGGTGCATTCTTTCTTGCTTGTTCAAA 1467 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 | ||| | ||||| | || ||||||||||||||||| || || | || | Sbjct 1466 TAAATCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATCTG-AACCAC 1408 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 | ||| | ||| || ||||| | |||||| || | ||| ||| | | || |||| Sbjct 1407 TCGTTGAAAAGAATGGTACATTTGCTTCACCTGCGGTTGCTTTGGCAATCAATGTTTTAC 1348 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 9938 | |||||||| || | | | ||||||| ||| ||||| || ||| | || | Sbjct 1347 CTGTACCTGGTGGTCCAACTAAAATTGCACCTCTTGGTATCTTTGCTCCAATGTCATGGA 1288 Query 9939 ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAA 9998 || ||| || | ||| | ||| | |||| |||||| | || |||| || | ||| Sbjct 1287 ATTTCTTTGGATTCTTTAAAAAGTTTACAAATTCTTCAATCTCTACTTTTGCTTCACCAA 1228 Query 9999 TCCCCTCAACATCGGTAAA 10017 || ||||||| |||| Sbjct 1227 GTCCTGCAACATCTTTAAA 1209 >seq2563 Length=3094 Score = 96.9 bits (106), Expect = 4e-15 Identities = 196/286 (69%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||| | |||||| || | |||||||||||| | || ||| | | ||| ||||| Sbjct 1218 GATTTGACGATCGAATCTACCTGGACGAAGTAATGCTGGATCTAAAACATCGCTACGATT 1277 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAG 9636 || | |||| ||||| | ||| | | | | ||||||||||||||| ||| || Sbjct 1278 TGTACCAGCGAATACAACGACACCAGATGTAGAAGAGAAACCATCCATCTCTACCAATAG 1337 Query 9637 TTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTT 9696 ||| || | || | || | |||||||| ||| | ||||||| | | ||| Sbjct 1338 TTGATTCAATGTATTCTCTCTCTCATCATTG--TGGAA-ACCACCACGTGATC-TCGCTC 1393 Query 9697 TCCCA-CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT 9755 | ||| ||||||| || ||||| ||||| |||||||| ||| ||| | || || ||| Sbjct 1394 TGCCAACGGCATCGATTTCATCGATGAATACGATGCAAGGTGTGTTTGCACGTGCCTCTT 1453 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTC 9801 ||||||||| | ||||| | || || |||||||||||||| Sbjct 1454 TAAAGAGATCTCTAACACGAGATGGACCAACGCCAACAAACATCTC 1499 >seq2472 Length=3280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 192/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 28311 AGTTTATACATTTTAGCACAGATGAAGTGTATGGTG------AATCCA-AAACCGATGAA 28363 ||||||||||| |||| || |||||||| |||||| ||| | ||| || || Sbjct 2400 AGTTTATACATGTTAGTACTGATGAAGTTTATGGTTGTGGAAAATTTATAAATAGAGAAA 2459 Query 28364 CCTTTTACAGAGGACACGGGCGTTTTACGACCAACCAACCCATATTCGGCTTCAAAGGCG 28423 ||| | ||| | | | | ||| |||||| || ||||| || || || || Sbjct 2460 TATTTCA-AGAAAATAAAACCCTATTAAAACCAACAAATCCATACTCTGCAAGTAAAGCA 2518 Query 28424 GCGGCAGAAATGATTGTGATGTCATACATTGAATCATTTAATATGAATATTAAAATTTTA 28483 | |||||| ||||| | ||| | ||||||||| || | | |||| | Sbjct 2519 TCAGCAGAACATTTTGTGCAATGCTACCATACATCATTTAAAATACCAACCACAATTGTT 2578 Query 28484 AGATGTAACAATGTGTATGGTCCGAATCAATATCCAGAAAAACTCATTCCAAAGTTTAAA 28543 ||| || |||||||||||||| || ||||||| |||||||| |||||||| ||| | Sbjct 2579 AGAATGAATAATGTGTATGGTCCCAAACAATATCATGAAAAACTAATTCCAAAATTT-AT 2637 Query 28544 CGACTT-TTGAGAAATAATGAAAAATGTACAATCCATGGT 28582 | | || || ||| ||||||||||||||||| |||||| Sbjct 2638 CAATTTATTATCAAAAAATGAAAAATGTACAATTCATGGT 2677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583238118445640