Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq861 100 1e-16 >seq861 Length=9344 Score = 100 bits (110), Expect = 1e-16 Identities = 177/256 (69%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 65036 TTCAA-TTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCAGTTCG---TCGTGT 65091 ||||| || ||| ||||||||||| | ||||| ||| ||| | | || || Sbjct 3498 TTCAAGTTTTGTAAAAATATATCTTGCTGATGCAGAATCTGAACCACCTTGCAAACGAGT 3439 Query 65092 TCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGAGC 65151 ||||| |||||| |||| |||| || | ||| |||||||||| |||||| ||||| Sbjct 3438 ACCAAATTGACCACTTGGTGTTAACAATGGTAAATTATTTGAACCAACAAAATTATGAGC 3379 Query 65152 CATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGTTCAGA 65211 |||| | |||| || ||||||| |||||| ||||| ||| | ||||||| Sbjct 3378 CATTTTAACGATTGTTGAATTTAAAGATTGTTCACCATGATGGTATGAAGTTTGTTCAGC 3319 Query 65212 GACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGA 65271 ||||| || ||||| | |||||||| || |||||||| |||||||| | Sbjct 3318 AACATAACCCGATAATTGTGATACTTTTATCTCATTTGTTAAACGACGTTTAAATGATGC 3259 Query 65272 ATACAATATTTTCCGT 65287 | | || ||||| ||| Sbjct 3258 AAATAAGATTTTACGT 3243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235671064119150