Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq140 114 9e-21 seq356 107 1e-18 seq1461 105 5e-18 seq52 95.1 9e-15 seq268 89.7 4e-13 seq64 87.8 1e-12 >seq140 Length=35707 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| |||||||||||||| ||| || || | || || ||| ||| Sbjct 26233 AATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACCATCACTCTCGAAGTTGAAGGCAG 26174 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || | | || ||| ||||| |||||||||||| |||| || || Sbjct 26173 TGACAATATCGAGAACGTAAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACCA 26114 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| | |||||||| || || |||||||| || || | || | | || |||||||| Sbjct 26113 ACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 26054 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||||||||||| |||| | ||||| ||| Sbjct 26053 CATCCAAAAAGAATCCACTCTTCATTTAGTT 26023 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||| | ||||| ||| |||||| |||| || ||| | | Sbjct 25320 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACAATTACACTTGAAGTTGAAGGTAGT 25261 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || |||||| ||||| |||||||||||| | || || || Sbjct 25260 GACAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAA 25201 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || |||||||| |||||||| || || | || | | || ||||| ||| Sbjct 25200 CAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTATAAC 25141 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 || ||||| || |||| | ||||| ||| Sbjct 25140 ATTCAAAAGGAATCCACTCTCCATTTAGTT 25111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||| | ||||| ||| || ||| | || || ||| | | Sbjct 25776 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACAATCACATTGGAAGTTGAAGGTTCT 25717 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || |||||| ||||| |||||||||||| | || || || Sbjct 25716 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAA 25657 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | ||||| || || ||||||||||| || | || | | || ||||||||| Sbjct 25656 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 25597 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||||||||| |||| | || || ||| Sbjct 25596 ATCCAAAAAGAATCCACTCTCCACTTAGTT 25567 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||||| ||||| ||| || ||| | || |||||| | || Sbjct 26004 ATGCAAATCTTCGTTAAAACTCTCACTGGTAAAACAATCACATTAGAAGTCGAAGGTTCC 25945 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || |||||| ||||| |||||||||||| | || || || Sbjct 25944 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAA 25885 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || |||||||| |||||||| || || | || | | || ||||| ||| Sbjct 25884 CAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTATAAC 25825 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 || ||||| || ||| | ||||| ||| Sbjct 25824 ATTCAAAAGGAATCTACTCTCCATTTAGTT 25795 >seq356 Length=19801 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||||||||| || ||| |||||| | || || ||| | | | Sbjct 11585 ATGCAAATTTTTGTTAAAACTCTTACAGGTAAAACAATTACATTGGAAGTTGAAGGTAGC 11526 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || || ||| ||| || || ||||||||| |||| || || Sbjct 11525 GATAACATTGAAAATGTTAAAGCAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 11466 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | |||||||| || || |||||||| || || | || | | || |||||||| Sbjct 11465 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAT 11406 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||||||||||| |||| | ||||| ||||| Sbjct 11405 ATCCAAAAAGAATCCACTCTTCATTTAGTTTT 11374 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||||||||| ||||||||||| || ||| || || | || || ||| | Sbjct 11816 AATATGCAAATTTTTGTTAAAACTCTTACAGGTAAAACCATCACTTTAGAAGTTGAAGGT 11757 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || | | || || ||| ||||| || ||||||||| |||| || Sbjct 11756 TCTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGAC 11697 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | |||||||| || || |||||||| || || | || | ||| || ||||| Sbjct 11696 CAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACCTTATCAGATTAT 11637 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||| |||||||| |||| | || || ||| Sbjct 11636 AACATTCAAAAAGAATCCACTCTCCACTTAGTT 11604 >seq1461 Length=5937 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27781 AATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTC 27840 |||| || ||||||||||||||| |||||||||||||| ||| ||||| | || || Sbjct 3429 AATACTATAATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACAATTACTCTCGAAGTA 3488 Query 27841 GAAAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCG 27900 ||| | ||||| || | || || ||| ||||| || || |||||| | || Sbjct 3489 GAAGGTTCCGACAATATTGAAAATGTAAAAACCAAAATTCAAGATAAGGAAGGTATCCCA 3548 Query 27901 ATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCC 27960 || || ||||| | ||||| || || ||||||||||| || | || | | || Sbjct 3549 CCAGACCAACAACGTCTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCT 3608 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||| ||||| || |||| | ||||| || Sbjct 3609 GATTACAACATTCAAAAGGAATCCACTCTCCATTTAGT 3646 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| |||||||| ||| |||||| | || || ||| | | Sbjct 3894 ATGCAAATCTTTGTTAAAACCCTTACTGGTAAAACTATTACTCTCGAAGTTGAAGGTAGT 3953 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| || || ||| || || || |||||| | || || | Sbjct 3954 GACAACATTGAGAAT--GTAAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCAGATC 4011 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| ||||| |||||||| || || | || | || |||||||||| Sbjct 4012 AACAACGTCTCATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACATTATCCGATTACA 4071 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | ||||||||||| |||| | || ||||| Sbjct 4072 ATATCCAAAAAGAATCCACTCTTCACTTGGT 4102 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| ||| ||||| | || || ||| | | | Sbjct 3666 ATGCAAATCTTTGTTAAAACACTCACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGC 3725 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| || || ||| || ||||| |||||| | || || | Sbjct 3726 GACAACATCGAGAAT--GTAAAGACAAAGATTCAAGACAAGGAAGGTATCCCACCAGACC 3783 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| || || |||||||| || |||| || | | || ||||||| Sbjct 3784 AACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGACGGTCGTACTCTTTCTGATTACA 3843 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||| || |||| | ||||| || Sbjct 3844 ACATCCAAAAGGAATCCACTCTCCATTTAGT 3874 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| || ||||| ||| ||||| | || || ||| | | Sbjct 4350 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGT 4409 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| || || ||||| ||||| |||||| | || || | Sbjct 4410 GACAACATTGAGAAT--GTTAAGACCAAAATTCAAGACAAGGAAGGTATCCCACCAGATC 4467 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| ||||| ||||||||||| || | || | | || ||||||| Sbjct 4468 AACAACGTCTCATTTTCGCCGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACA 4527 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||| || |||| | ||||| || Sbjct 4528 ACATCCAAAAGGAATCCACTCTCCATTTAGT 4558 >seq52 Length=54870 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | ||||| ||| ||||| | || || ||| | | | Sbjct 45692 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGC 45751 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || || ||| ||||| || ||||||||| | || || || Sbjct 45752 GATAACATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAA 45811 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | |||||||| || || || ||||| || || | || | | || ||||||||| Sbjct 45812 CAAAGATTAATTTTCGCTGGTAAGCAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 45871 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||||||||||| |||| | ||||| ||||| Sbjct 45872 ATCCAAAAAGAGTCCACTCTCCATTTAGTTTT 45903 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 || ||||||||||||||| ||||| | ||||| ||| ||||| | || || ||| | Sbjct 45232 TACAATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATTACCTTAGAAGTTGAAGG 45291 Query 27846 CACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || | | || || ||| ||||| || ||||||||| |||| || Sbjct 45292 TAGTGATAACATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGA 45351 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || ||||| | ||||| || || ||||||||||| || | || | | || ||||| Sbjct 45352 CCAACAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTA 45411 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 || ||||||||||| |||| | ||||||||||| Sbjct 45412 TAATATCCAAAAAGAATCCACTCTCCATTTGGTTTT 45447 >seq268 Length=24546 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||||||||| |||||| | ||||| ||| || || |||| || ||| | Sbjct 17608 AAAATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACCATAACTCTTGAAGTTGAAGGT 17549 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || || ||| |||||| | || ||||| |||| || Sbjct 17548 TCAGATAATATTGAAAATGTAAAAGCAAAAATTCAAAATAAGGAAGGAATTCCTCCAGAT 17489 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | ||||| ||||| || ||||||||||| || | || | || || |||||| Sbjct 17488 CAACAAAGATTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCAGATTAC 17429 Query 27967 AACATCCAAAAAGA--GAGCACTTTGCATTTGGTTTT 28001 || || ||||| || | ||||| ||||| ||||| Sbjct 17428 AATATTCAAAAGGAATCAACACTT--CATTTAGTTTT 17394 >seq64 Length=50952 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | ||||| ||| |||||| | || || ||| ||| Sbjct 24282 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACAATTACATTGGAAGTTGAAGGCAGT 24223 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | | | ||| |||||| || || || ||||||||| | || || | Sbjct 24222 GATAACATTGAGAAT--GTCAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGATC 24165 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| || || |||||||| || || | || | | ||||| || | Sbjct 24164 AACAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTATA 24105 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||||||||| || |||| | ||||||||||| Sbjct 24104 ACATCCAAAAGGAATCCACTCTCCATTTGGTTTT 24071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355848907365897