Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq52 89.7 4e-13 seq64 86.0 5e-12 seq140 84.2 2e-11 >seq52 Length=54870 Score = 89.7 bits (98), Expect = 4e-13 Identities = 169/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 39043 TAAAATTTATTCAAG-CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTG 39101 || |||||| ||| || |||||||| | ||| |||||||| || ||| || ||||| Sbjct 46387 TACAATTTA---AAGACCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCCTTTTG 46331 Query 39102 TATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACG 39161 || ||||| || | ||| || || | || || | ||||| || || || |||||||| Sbjct 46330 GATGTTATAGTCAGAAAGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACG 46271 Query 39162 CTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 || || || |||||| || ||||| || ||| || ||||| || | | Sbjct 46270 TTGTTGATCTGGTGGGATACCT-TCTTTATCTTGGATCTTGGCTTTGACGTTCTCAATGT 46212 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| || || || |||| || || |||| || || | |||||||||||||||| Sbjct 46211 TATCACTGCCTTCAACCTCCAAGGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTT 46152 Query 39281 GCAT 39284 |||| Sbjct 46151 GCAT 46148 >seq64 Length=50952 Score = 86.0 bits (94), Expect = 5e-12 Identities = 168/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 39043 TAAAATTTATTCAAG-CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTG 39101 || |||||| ||| || |||||||| | ||| |||||||| || ||| || ||||| Sbjct 24043 TACAATTTA---AAGACCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCCTTTTG 24099 Query 39102 TATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACG 39161 || ||||| |||| || || || | || || | ||||| || || || |||||||| Sbjct 24100 GATGTTATAGTCGGAGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACG 24159 Query 39162 CTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 || || || |||||| || ||||| || ||| || ||||| || | | Sbjct 24160 TTGTTGATCTGGTGGGATACCT-TCTTTATCTTGGATCTTGGCTTTGACATTCTCAATGT 24218 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| || || || |||| || || |||| || || | ||||||||||| |||| Sbjct 24219 TATCACTGCCTTCAACTTCCAATGTAATTGTTTTACCAGTTAAGGTTTTAACAAAAATTT 24278 Query 39281 GCAT 39284 |||| Sbjct 24279 GCAT 24282 >seq140 Length=35707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||||||| | | || ||||| || ||| || ||||| || |||||||| | | Sbjct 25094 CCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAATCAGAA 25153 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || | || || | ||||| || ||||| |||||||| || ||||| |||||| Sbjct 25154 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGG 25213 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 || |||||||| |||||| ||||| | | | | || || || || Sbjct 25214 ATACCT-TCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTGTCACTACCTTCAAC 25272 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || |||| || || | |||||||||||||||||||| Sbjct 25273 TTCAAGTGTAATTGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 25320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||||||| | | || ||||| || || || ||||| || |||||||| | | Sbjct 25778 CCACCTCTTAATCTAAGAACTAAATGGAGAGTAGATTCCTTTTGAATGTTATAATCAGAA 25837 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || | || || | ||||| || ||||| |||||||| || ||||| |||||| Sbjct 25838 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGG 25897 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 || |||||||| |||||| ||||| | | | ||||| || || Sbjct 25898 ATACCT-TCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCGGAACCTTCGAC 25956 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || || || |||||||| ||||||||||| Sbjct 25957 TTCTAATGTGATTGTTTTACCAGTGAGAGTTTTAACGAAGATTTGCAT 26004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429529313644343