Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq52 113 4e-20 seq1461 100 2e-16 seq268 91.5 1e-13 >seq52 Length=54870 Score = 113 bits (124), Expect = 4e-20 Identities = 183/261 (70%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| |||| || | ||| ||||||||||| ||||| ||||| | Sbjct 45462 CCACCTCTTAATCTTAAAACCAAATGGAGAGTGGATTCTTTTTGGATATTATAATCAGAG 45403 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||||||||||||||| || || | || || | |||||||||| || Sbjct 45402 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGA 45343 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || |||||| ||| |||| | | | || | || || Sbjct 45342 ATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTTCAATGTTATCACT--ACCTTCAA 45285 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATTACAATAT 101249 ||| | |||||| ||||| || || |||||||||| ||||||||||||| || Sbjct 45284 CTTCTAAGGTAATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATT------GTAA 45231 Query 101250 ATTTTTTACTTTGTATATATA 101270 ||||||| ||| |||||||| Sbjct 45230 ATTTTTT--TTTTTATATATA 45212 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||||| || | || | ||| ||||||||||| ||||||||||||| Sbjct 45690 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGATTCTTTTTGGATATTGTAATCGGAG 45631 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| |||||||| || || | ||||| | |||||||||| || Sbjct 45630 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGG 45571 Query 101132 ACGCCTTCTTTGTC 101145 | |||||||| || Sbjct 45570 ATACCTTCTTTATC 45557 >seq1461 Length=5937 Score = 100 bits (110), Expect = 2e-16 Identities = 184/267 (69%), Gaps = 7/267 (3%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | || | || | ||| ||||| |||||||| |||||||| | Sbjct 3664 CCACCTCTTAATCTGAGTACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 3605 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||||||||||||||| || || | ||||| | |||||||||| || Sbjct 3604 AGAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGG 3545 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT- 101190 | ||||| || || |||||| ||| |||| | | | || | || || | Sbjct 3544 ATACCTTCCTTATCTTGAATTTTGGTTTTTACATTTTCAATATTGTC--GGAACCTTCTA 3487 Query 101191 -TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATTACAATAT 101249 ||||| ||||| ||||| || || | ||||||| ||||||||||||||| | ||| Sbjct 3486 CTTCGAGAGTAATTGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGCATTAT---AGTAT 3430 Query 101250 ATTTTTTACTTTGTATATATATGTAAT 101276 |||||| ||| || || | | |||| Sbjct 3429 TTTTTTTTCTTGGTTGATTTTTTTAAT 3403 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || ||||| |||||||| |||||||| | | ||| ||||||||||||||| || Sbjct 4318 GTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCTTCCAATTGTTTACCA 4259 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 || | || | |||||||||||| || | ||||||||||| ||||||| ||| Sbjct 4258 GCGAAAATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGAATTTTTGTTTTA 4199 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTT 101221 |||| | | | |||| | | ||| | || || || || || || |||||| Sbjct 4198 ACATTTTCAATATTATCTGAGCCCTCAACTTCAAGAGTGATGGTCTTACCAGTTAATGTT 4139 Query 101222 TTAATAAAAATTTGCAT 101238 |||| ||| |||||||| Sbjct 4138 TTAACAAAGATTTGCAT 4122 >seq268 Length=24546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || || | |||||| || | || | |||||||| ||||||||||||||||| | Sbjct 17379 CCACCACGAAGTCTTAAAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCTGAT 17438 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| ||||||||||||||| || ||| | || | |||||||| ||| || Sbjct 17439 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGAGGA 17498 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | ||||| || | ||||||| ||| |||| | | | || || || || Sbjct 17499 ATTCCTTCCTTATTTTGAATTTTTGCTTTTACATTTTCAATATTATC--TGAACCTTCAA 17556 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATT 101242 ||| | || || ||||| || || || ||||||| ||||||||||||| || Sbjct 17557 CTTCAAGAGTTATGGTTTTTCCAGTTAAAGTTTTAACAAAAATTTGCATTTTT 17609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409645267582749