Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq316 147 2e-30 >seq316 Length=22015 Score = 147 bits (162), Expect = 2e-30 Identities = 210/292 (72%), Gaps = 13/292 (4%) Strand=Plus/Minus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| |||||||||||||| |||||||| || | ||||| ||| || ||||| ||||| Sbjct 20785 ACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAA 20726 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || |||||||||||||||||||| | |||||| || | ||| ||| || || Sbjct 20725 ACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAAA 20666 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--TCT 4724 ||| || || || || ||||| || || || || | || || |||| || Sbjct 20665 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA-----TGAATTTGAATCA 20611 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 ||||||||| |||||||||| | || || || ||||| || |||||||| | || || Sbjct 20610 TTAATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGCA 20551 Query 4785 TTAAATAATTTA-CTTT--TTTCAAATGGGTCTTGAATATAAGTGTCTATTA 4833 |||||||||||| |||| ||| | |||| ||||||||| || |||| Sbjct 20550 TTAAATAATTTATCTTTAGTTT---GTTTATCTTTAATATAAGTTTCAATTA 20502 Score = 111 bits (122), Expect = 1e-19 Identities = 121/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 ||||| ||||||||||||||||||| || ||||| ||||| || || || ||||| ||| Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 4899 TCTGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 |||| | ||| ||||| ||| |||||| | | | ||||| || || ||||| || Sbjct 20337 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTTGCAAGATTTTCATTAACAATACCATC 20279 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT 4995 | || |||||||| ||||||||||| || || |||| Sbjct 20278 AGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAGT 20241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427033408280963