Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2826 210 3e-49 seq316 125 1e-23 >seq2826 Length=2534 Score = 210 bits (232), Expect = 3e-49 Identities = 1123/1771 (63%), Gaps = 70/1771 (4%) Strand=Plus/Plus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||| ||||||||||||||||| |||| ||| |||| || || ||||| Sbjct 300 GTACGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAG 359 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 || ||||||| | | | || || || || || || | ||||||||||| ||| Sbjct 360 GTGAGTTTGGCAAAGGTTGGTTCAGCGATGAAAACGTTGAAACTTTGACTTTGATCAATG 419 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 ||||| || | |||||| ||||| | || | || ||||| |||||||||||| ||| Sbjct 420 AAAGCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGACGAATTTCCCAAACGGTT 479 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTATT---TTGAATGGAACCACCATCT 77048 || | | || ||| | |||||||||| | | | ||| || ||||||| || Sbjct 480 TTATAGAGTTCTTTCAATTCATCTGGAATGCCACCAATGGATTGGATTGAACCACGTGCT 539 Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAA--CTCTAA 77106 | || ||| |||||| || || |||| ||| || | ||| | ||| || Sbjct 540 GCAATGATTTGATTCTTCATCTCTGGTGTCCA-AATACCCAATTCCATAAGATCCTCCAA 598 Query 77107 GGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTAC 77166 | || ||| || || ||| || |||| |||||| | |||| ||||||| || Sbjct 599 CAAT-TGTTTATTGACGATAGTAAACTCACCAGCCAATACACGACGACTGTAAATGTTTG 657 Query 77167 TGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCA 77226 || |||||||| | |||| ||||| || | |||||| ||| ||||| ||||||| Sbjct 658 AAGTGTATGGTTCAAAGCATTCGTTGTTACCAAGGATTTGACTAGTTGAAGCGGTTGGCA 717 Query 77227 TAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGA---TTTTATCTTTTAGAT 77283 | ||||| | || | || | | |||| | | ||| | ||||||||||| | Sbjct 718 TTGGTGCAATTAAGAGGGAGTTACGTAAACCACCTTTATTGACGATCTTATCTTTTAGGT 777 Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACA---ACATCCCAAAGATCGTATTGTAGAATTC 77340 | ||||| |||| | |||| | | || | ||| | ||||||||| || || | Sbjct 778 CTGCCCAATTCCAACG---TGAACTTGGAGTCACTTTCCACATATCGTATTGAAGGATAC 834 Query 77341 CGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCAC 77400 | || || ||| || | | | ||||| || || || | || | |||| Sbjct 835 CTTTGGATGCTGGTGAGCCTTGGAAAGACTCATATGGACCATCACGTAGTGCCAATTCAT 894 Query 77401 AACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTG 77460 | || ||| ||| || |||| || ||||| || | ||| | || | | | Sbjct 895 GAGAGGCGGTCAAAGCTGCGAAATAGATGGTTTCAGCGATTTCAACATTTA-ATTTAGCG 953 Query 77461 -CTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACT 77519 | ||| ||||||||| || | | | |||| || |||| ||||| || || | Sbjct 954 GCGGCAACACTATCAAAAGGCATACGCATTTGAATGAAAACATCGGCTAAACCTTGGATA 1013 Query 77520 CCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAA 77579 ||||||||||| || | |||||| ||| ||| ||||||| || | ||||||| | Sbjct 1014 CCAATACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCCTCGACCACAGGATAAAAG 1073 Query 77580 TTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTT---AGT 77636 ||| || || || |||||||| ||| | | ||| || ||| || Sbjct 1074 TTACGATCAATGATAACGTTGAGATTG---ACAGTGA--TCAACTTGGTGATTTCAAAGA 1128 Query 77637 TTAA--GAAAATCAAA-------TCTT---------------CCATCTATA-ACAAAC-- 77669 || || |||||| |||| || ||| | || || Sbjct 1129 GGAATTGATGATCAAACTCCTTCTCTTTTGGATCGGTTGAACCCGTCTTTTGACGAATGA 1188 Query 77670 ATGTTCAAAG--CTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATAT 77726 || || ||| | || || || ||||| |||||||| | |||| | | | || ||| Sbjct 1189 ATTTTGGAAGGGCAATTGAGGCGAGATTGCAAACTGCAATTTCATCTGGTGATGTG-TAT 1247 Query 77727 TGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTC 77786 || || || || || || |||||||||| | || || || ||||||||||| ||| Sbjct 1248 TGAATGATTTCAGTGCAAAGATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGAT 1307 Query 77787 TTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCG 77846 || |||||| | ||||||||| | || || || || || ||||||| |||||||| Sbjct 1308 TTGGAATTGCAAGCGTCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCC 1367 Query 77847 ATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGAT-TTGTATCGCCTCTCTCTT-- 77903 ||||| | ||| | || ||||| || | | | ||| | || | || Sbjct 1368 ATAATGGCGAACCAAAGTTCTTGTGCTTTGATTACACGTCTTGCGAGGTCTGG-TGTTGC 1426 Query 77904 -TCATA--TTGAGTATATAGC-CGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG 77959 ||||| || |||| | || || | ||| | | ||| | | || || Sbjct 1427 CTCATACTTTAAGTAGAGGGCACGATG---TTCTTGGGAATGAGTTTCAGCGAGACCGGG 1483 Query 77960 GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAG 78019 ||| ||||| || | | |||||| ||||||| || | || || | |||||||| Sbjct 1484 TGCTTCGTTTGGACAAAAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGAT 1543 Query 78020 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATT 78079 |||| | ||| || ||| |||||||||| | ||| || || || || || || Sbjct 1544 ATCACTAACCCAGAGGGCATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTT 1603 Query 78080 CTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCAT 78139 || || ||||||| |||||| | | ||| | ||||||||| || | |||| || | Sbjct 1604 TTTCTTGAGATCGATAAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAA 1663 Query 78140 AACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCT 78199 | || || ||| ||| || ||||| | || | ||||| | ||| |||| | Sbjct 1664 GGCACCCTTTCTTTTGCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACG 1723 Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259 | |||||| | | ||| || || ||||| || ||| |||||||||| | || Sbjct 1724 AAGCATTGGTACCAAACCATTGCTAGTGCCATTGGTACCACGAATATAACTTTGAGCGGC 1783 Query 78260 GCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACG 78319 ||||| ||| | || | || || || || || |||| || || | || || | Sbjct 1784 ACGAATTTTATGTACGGCAACACCAATACCACCGGCACTCTTTGAAATCAATGCACATTG 1843 Query 78320 TTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 |||||| || || |||||||| || || || ||| |||| | || | ||||| Sbjct 1844 TTTCAAGGTGTCATAGATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACATGA 1903 Query 78380 AGACATTTGATGATGAACA-GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACC 78438 ||||||||| || |||| || || || || |||||||| || | ||||| || || Sbjct 1904 AGACATTTG-TGGTGAAGGTGTACCAGCGTTGAATAATGTTGGTGTGGCATGTGTGAATA 1962 Query 78439 ATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTC 78498 ||| || || || | || || | || || || || |||||| ||| || | Sbjct 1963 GTTTCTCCGATAGACGTCGATAGGTGTTGATCGCAGACTCAATGTCCTCGCCATGGATAC 2022 Query 78499 CTACCGCTACACGCATCAACATATGCTGAGG 78529 | | | ||||||||||||||||| || || Sbjct 2023 CAATGGAAACACGCATCAACATATGTTGTGG 2053 >seq316 Length=22015 Score = 125 bits (138), Expect = 1e-23 Identities = 210/299 (70%), Gaps = 10/299 (3%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| |||||||||||||| | ||||||||| | ||| ||||| || |||||||| | Sbjct 20785 ACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAA 20726 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||||| || | ||||| | |||||| |||| ||| ||| || || Sbjct 20725 ACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAAA 20666 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG--TTGTGT 48317 ||| || || || || |||||||| | | ||| | || || || | | | Sbjct 20665 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCT--GCAAATGAATTTGAATCATTA 20608 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| | | |||||| || |||||||| || ||||| || |||||||| || |||||| Sbjct 20607 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGCATTA 20548 Query 48378 AAGAGAAAGtttttttCA--TTG-CTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 || || || | || | ||| ||||||||| ||||| || ||||||||||| || Sbjct 20547 AA---TAATTTATCTTTAGTTTGTTTATCTTTAATATAAGTTTCAATTAAAAGACTTTA 20492 Score = 109 bits (120), Expect = 8e-19 Identities = 117/150 (78%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 ||||| |||| || || |||||||||||||| || ||||| || || |||||||| ||| Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 48489 TCTGTGATCTGTACCTCCGTACA-AAATC--GTTCAGCCAAATTCTCATTTACTATTCCA 48545 |||| || ||||| || | ||| ||||| ||| || | ||| ||||| || || ||| Sbjct 20337 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGATTTTCATTAACAATACCA 20281 Query 48546 TCACTAGCAGCAAAAAATGCTAATACATGT 48575 ||| |||||||||||||| || |||||| Sbjct 20280 TCAGATGCAGCAAAAAATGCCAAAACATGT 20251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694641786067040