Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2826 163 4e-35 seq316 120 4e-22 >seq2826 Length=2534 Score = 163 bits (180), Expect = 4e-35 Identities = 1139/1821 (63%), Gaps = 69/1821 (4%) Strand=Plus/Plus Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 |||| ||||| ||||| | | | ||||| ||||| ||||||||||||||||| | Sbjct 265 CAACAGTGAATTGAATTGCATCAGCAGCTGGACGAGTACGAAGATAGTACATACCAGTCT 324 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 ||| ||| |||| || || ||||| || ||||||| | | | || || | Sbjct 325 TTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAGGTGAGTTTGGCAAAGGTTGGTTCAG 384 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 | || || || | ||||||||||| |||||||| || | |||||| ||||| | Sbjct 385 CGATGAAAACGTTGAAACTTTGACTTTGATCAATGAAAGCACCACGATCAGCGGCCATAT 444 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611 || | || ||||| |||||||||||| ||||| | | || ||| | ||||||| Sbjct 445 CAATGAGAGTTCTTTGACGAATTTCCCAAACGGTTTTATAGAGTTCTTTCAATTCATCTG 504 Query 75612 GAAGATTTGTATT---TTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668 ||| | | ||| || || || | | | || ||| |||||| ||||| Sbjct 505 GAATGCCACCAATGGATTGGATTGAACCACGTGCTGCAATGATTTGATTCTTCATCTCTG 564 Query 75669 CATTCCACAATTTTCTCTCGGTTAAAA--CTCTAAGGAGATGAGGATTAACAATTTGAAA 75726 |||| ||| | | ||| | ||| || | || ||| || || ||| Sbjct 565 GTGTCCA-AATACCCAATTCCATAAGATCCTCCAACAAT-TGTTTATTGACGATAGTAAA 622 Query 75727 TTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 75786 || |||| |||||| | ||| ||||||| || || |||||||| | |||| || Sbjct 623 CTCACCAGCCAATACACGACGACTGTAAATGTTTGAAGTGTATGGTTCAAAGCATTCGTT 682 Query 75787 GTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 75846 ||| || | |||||| ||||||||| || ||||| ||||| | || | || | Sbjct 683 GTTACCAAGGATTTGACTAGTTGAAGCGGTTGGCATTGGTGCAATTAAGAGGGAGTTACG 742 Query 75847 GAGACCATGTGTTCTGA---TTTTATCTTTTAGATATTTCCAATCCCAAAG--ATCTGAT 75901 | |||| | | ||| | ||||||||||| | | ||||| |||| | | || | Sbjct 743 TAAACCACCTTTATTGACGATCTTATCTTTTAGGTCTGCCCAATTCCAACGTGAACT--T 800 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961 || || | ||| | ||||||||| || || || ||| || ||| || | | Sbjct 801 GGAGTCACTTTCCACATATCGTATTGAAGGATACCTTTGGATGCTGGTGAGCCTTGGAAA 860 Query 75962 GTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAA 76021 | || || | || || | || | ||| | || || || || |||| Sbjct 861 GACTCATATGGACCATCACGTAGTGCCAATTCATGAGAGGCGGTCAAAGCTGCGAAATAG 920 Query 76022 ATTGTTTCGAAAATCTTCTTATTAAGATCTTGCG-CTTCAAGACTATCAAAAGGATAATG 76080 || ||||| || | ||| | || | ||| | ||| |||||||||||| | | Sbjct 921 ATGGTTTCAGCGATTTCAACATTTA-ATTTAGCGGCGGCAACACTATCAAAAGGCATACG 979 Query 76081 TAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 76140 | |||| || |||| |||| || || | ||||||||||| || | |||||| Sbjct 980 CATTTGAATGAAAACATCGGCTAAACCTTGGATACCAATACCAATTGGACGATGTCTAAG 1039 Query 76141 ATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| ||| ||| || | ||| ||| | ||| ||| || || |||||||| Sbjct 1040 ATTTGAAGTTTTAGCCTCGACCACAGGATAAAAGTTACGATCAATGATAACGTTGAGATT 1099 Query 76201 TCTGACAACTACTTTAACCACGTCCTTT-----AGTTTGAGAAAATCAAA---------T 76246 |||| | | ||| || ||| || || |||||| | Sbjct 1100 ---GACAGTGA--TCAACTTGGTGATTTCAAAGAGGAATTGATGATCAAACTCCTTCTCT 1154 Query 76247 TTTCCATC--------------TATCACAAACATATT----AAGAGCTATAGATGCTAGA 76288 ||| ||| | | || || ||| ||| || || || || ||| Sbjct 1155 TTTGGATCGGTTGAACCCGTCTTTTGACGAATGAATTTTGGAAGGGCAATTGAGGCGAGA 1214 Query 76289 TTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTA 76348 || ||||| || | |||| | | ||||| || || || ||||| ||||||||| Sbjct 1215 TTGCAAACTGCAATTTCATCTGGTGATGTGTATTGAATGATTTCAGTGCAAAGATTACTA 1274 Query 76349 CACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGA 76408 | | || || || ||||||||||| ||| || || || | ||||||||| | Sbjct 1275 CTACTAATGGTACCGAGATTTTGTTGATTGGATTTGGAATTGCAAGCGTCCTTATACAAG 1334 Query 76409 ACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCT 76468 | || || || |||||||||| |||||||| ||||| | ||| | || ||| Sbjct 1335 ATGAATGGTGTACCAGTTTCAACTTGTGATTCCATAATGGCGAACCAAAGTTCTTGTGCT 1394 Query 76469 TTTATTATAGAT-TTGTATCGCTTCTC-TCTT---TCATATTGTGTATATAACCGTTCAA 76523 || |||| | | ||| | ||| | || ||||| | | || | | || Sbjct 1395 TTGATTACACGTCTTGCGAGG--TCTGGTGTTGCCTCATACTTTAAGTAGA---GGGCAC 1449 Query 76524 ATTCATCTCCCCAAACA---TCATCCAAACCAGGACATTCATTCGGACACATCAATGACC 76580 | ||| || | ||| | | ||| || ||| || ||||| | | ||||| Sbjct 1450 GATGTTCTTGGGAATGAGTTTCAGCGAGACCGGGTGCTTCGTTTGGACAAAAGAGTGACC 1509 Query 76581 ACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 76640 | ||||||| || | || || | |||||||| |||| | ||| || ||| |||| Sbjct 1510 AATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTAACCCAGAGGGCATAGAATA 1569 Query 76641 GATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAA 76700 |||||| | ||| || || || || || || || || ||||| | ||||| | | Sbjct 1570 GATCTCTAGCTCTCATCTCCTCCTTGCCAGTGTTTTTCTTGAGATCGATAAACTCAAAGA 1629 Query 76701 TATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCT 76760 ||| | ||||||||| || | |||| || | ||||| || ||| ||| || | Sbjct 1630 CATCGGCATGCCATGGCTCCAAGTATACGGCAAAGGCACCCTTTCTTTTGCCACCACCTT 1689 Query 76761 GATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATG 76820 |||| | || | || || | ||| |||| | | |||||| | | || || | Sbjct 1690 GATCGACGTAACGAGCGGTATCATTGAAAACACGAAGCATTGGTACCAAACCATTGCTAG 1749 Query 76821 TACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTA 76880 | ||||| || ||| |||||||||| | |||||||| ||| | | | || | Sbjct 1750 TGCCATTGGTACCACGAATATAACTTTGAGCGGCACGAATTTTATGTACGGCAACACCAA 1809 Query 76881 TTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTA 76940 | || || || | || || || | ||||| ||||||| ||||||||||| || || | Sbjct 1810 TACCACCGGCACTCTTTGAAATCAATGCACATTGTTTCAAGGTGTCATAGATACCATCGA 1869 Query 76941 TACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA-CAGTTCCT 76999 | ||| ||| |||| | || | ||||| ||||||||| || |||| || || Sbjct 1870 TTGAATCCTCCTTCATTTGAACCAAGAAACATGAAGACATTTG-TGGTGAAGGTGTACCA 1928 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 || || || ||||| || | ||||| ||||| ||| || || || | || || Sbjct 1929 GCGTTGAATAATGTTGGTGTGGCATGTGTGAATAGTTTCTCCGATAGACGTCGATAGGTG 1988 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 | || | | || || ||| ||| || || | | ||||||||||||||||| Sbjct 1989 TTGATCGCAGACTCAATGTCCTCGCCATGGATACCAATGGAAACACGCATCAACATATGT 2048 Query 77120 TGAGGTCGTTCTACAGTCTTA 77140 || || || |||||| | ||| Sbjct 2049 TGTGGACGCTCTACAATTTTA 2069 >seq316 Length=22015 Score = 120 bits (132), Expect = 4e-22 Identities = 208/300 (69%), Gaps = 12/300 (4%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| |||||||||||||| | |||||||| | ||| ||||| || |||||||| | Sbjct 20785 ACAAGCAAAATCACAATGTAAACCTTCATCACGTGAAATCAATTCATTTGAAAATGTTAA 20726 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 || ||||||| || | |||||| | |||||| || | ||| ||| || || Sbjct 20725 ACCTGGCATTAAACCTCTCTTTTTCAACCAAAAAATTGAACAAAAACTACCACTGAAAAA 20666 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC---GTAACTGGCATCATTATG 46805 ||| || || || || || ||||| || | | ||| | || | | |||||| Sbjct 20665 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATTTGAATCATT--- 20609 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 |||||| ||| ||||| || ||||| || || ||||| || |||||||| || ||||| Sbjct 20608 AATCCATCTTAATGCCCATTCTGCCTTCTTTTTAACACATGGAATTGTTTCAATTGCATT 20549 Query 46866 AAAGAGAAAGtttttttCA---TCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 ||| || || | || | | ||||||||| ||| || || ||||||||||| || Sbjct 20548 AAA---TAATTTATCTTTAGTTTGTTTATCTTTAATATAAGTTTCAATTAAAAGACTTTA 20492 Score = 109 bits (120), Expect = 8e-19 Identities = 117/150 (78%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 ||||| |||| ||||| || |||||||| || || ||||| || || |||||||||||| Sbjct 20397 CTATAGGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 20338 Query 46978 TCAGTAATCTGTACCTCTGTACA-AAATC--GTTCAGACAAATTCTCATTCACTATTCCA 47034 || | ||| ||||| || | ||| ||||| ||| | | ||| ||||| || || ||| Sbjct 20337 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGATTTTCATTAACAATACCA 20281 Query 47035 TCACTAGCAGCAAAAAATGCCAATACATGT 47064 ||| ||||||||||||||||| |||||| Sbjct 20280 TCAGATGCAGCAAAAAATGCCAAAACATGT 20251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712906675763520