Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq52 123 2e-23 seq268 120 3e-22 seq356 113 4e-20 seq64 113 4e-20 seq140 100 2e-16 seq1461 93.3 4e-14 >seq52 Length=54870 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| ||||| || || || |||||||||||| | ||| ||| || Sbjct 45235 AATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAG 45294 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| ||| | |||||| |||||| || |||||||| |||| || || Sbjct 45295 TGATAACATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGACCA 45354 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | || |||| || || ||||||||||||||| | ||| | | |||||||| Sbjct 45355 ACAACGTCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTATAA 45414 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTT 111311 ||| ||||||||||| || || ||||| || || Sbjct 45415 TATCCAAAAAGAATCCACTCTCCATTTGGTTTT 45447 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| || || || |||||||||||| | ||| ||| ||| Sbjct 45692 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGC 45751 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | |||||| |||||| || |||||||| | || || ||| Sbjct 45752 GATAACATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAA 45811 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| || || || ||||| |||||| | ||| | | ||||| || Sbjct 45812 CAAAGATTAATTTTCGCTGGTAAGCAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 45871 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || |||||||| || || || |||||||| || Sbjct 45872 ATCCAAAAAGAGTCCACTCTCCATTTAGTTTT 45903 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| || || || ||||| ||||| ||||| ||| || Sbjct 45920 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACAATTACATTGGAAGTTGAAGGTAGT 45979 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | || ||| || ||| || |||||||| | || |||||| Sbjct 45980 GATAACATTGAGAACGTCAAAGCCAAGATTCAAGATAAAGAAGGTATCCCACCAGATCAA 46039 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||||| || || |||||||| |||||| | ||| | |||| ||||| Sbjct 46040 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTATAAC 46099 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||||||||| || || || ||||| Sbjct 46100 ATCCAAAAAGAATCCACTCTCCACTTAGT 46128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| || || || ||||| |||||| |||| ||| ||| Sbjct 46148 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACAATTACCTTGGAGGTTGAAGGCAGT 46207 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | || ||| || || || |||||||| | || |||||| Sbjct 46208 GATAACATTGAGAACGTCAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGATCAA 46267 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||||| || || ||||||||||||||| | ||| | | || ||||| Sbjct 46268 CAACGTCTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGACTATAAC 46327 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||| ||||| || || ||||| || || Sbjct 46328 ATCCAAAAGGAATCCACTCTCCATTTGGTTTT 46359 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| || || || ||||| || ||| | || ||| | Sbjct 45464 ATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACAATCACCTTAGAGGTTGAAGGTTCC 45523 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | |||||| || || || |||||||| | || || ||| Sbjct 45524 GATAATATCGAAAATGTAAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGACCAA 45583 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||||| || || |||||||| |||||| | ||| | ||||||| ||| Sbjct 45584 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGATTACAAT 45643 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||||||||| || || |||||||| || Sbjct 45644 ATCCAAAAAGAATCCACTCTCCATTTAGTTTT 45675 >seq268 Length=24546 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 111096 AAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACC 111155 |||||||||||||||||| ||||| || || || |||||||| || | ||| ||| Sbjct 17609 AAAAATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACCATAACTCTTGAAGTTGAAGG 17550 Query 111156 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111215 ||| | ||| | |||||| ||||||| | || ||||| |||| || Sbjct 17549 TTCAGATAATATTGAAAATGTAAAAGCAAAAATTCAAAATAAGGAAGGAATTCCTCCAGA 17490 Query 111216 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111275 ||||||||| | || | ||| || ||||||||||||||| | ||| | | ||||| Sbjct 17489 TCAACAAAGATTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCAGATTA 17430 Query 111276 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||| ||||| ||||| |||||||| || | || || ||||| Sbjct 17429 CAATATTCAAAAGGAATCAACACTTCATTTAGTTTTAAGACTTCGTGGTGG 17379 >seq356 Length=19801 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || ||||| ||||| ||||| ||| ||| Sbjct 11585 ATGCAAATTTTTGTTAAAACTCTTACAGGTAAAACAATTACATTGGAAGTTGAAGGTAGC 11526 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | || ||| ||| ||| || |||||||| |||| |||||| Sbjct 11525 GATAACATTGAAAATGTTAAAGCAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 11466 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| || || |||||||| |||||| | ||| | | ||||| ||| Sbjct 11465 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAT 11406 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||||||||| || || |||||||| || Sbjct 11405 ATCCAAAAAGAATCCACTCTTCATTTAGTTTT 11374 >seq64 Length=50952 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| || || || ||||| ||||| ||||| ||| || Sbjct 24510 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACAATTACTTTGGAAGTTGAAGGTAGT 24451 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | |||||| |||||| || |||||||| |||| |||||| Sbjct 24450 GATAACATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 24391 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | || || | ||| || |||||||| |||||| | ||| | | || ||||| Sbjct 24390 CAACGTCTCATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTATAAC 24331 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||||||||| || || |||||||| || Sbjct 24330 ATTCAAAAAGAATCAACTCTTCATTTAGTTTT 24299 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| || || || ||||| ||||| ||||| ||| ||| Sbjct 24282 ATGCAAATTTTTGTTAAAACCTTAACTGGTAAAACAATTACATTGGAAGTTGAAGGCAGT 24223 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| ||| | || ||| || || || |||||||| | || |||||| Sbjct 24222 GATAACATTGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGTATCCCACCAGATCAA 24163 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||||| || || |||||||| |||||| | ||| | |||| ||||| Sbjct 24162 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTATAAC 24103 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||| ||||| || || ||||| || || Sbjct 24102 ATCCAAAAGGAATCCACTCTCCATTTGGTTTT 24071 >seq140 Length=35707 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| ||||| | || || |||||||| || | ||| ||| ||| Sbjct 26233 AATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACCATCACTCTCGAAGTTGAAGGCAG 26174 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | |||||| ||||| ||||||||||| |||| || || Sbjct 26173 TGACAATATCGAGAACGTAAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACCA 26114 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||||| | |||| || || |||||||| |||||| | ||| | | ||||| || Sbjct 26113 ACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 26054 Query 111279 TATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||||||||| || || |||||||| Sbjct 26053 CATCCAAAAAGAATCCACTCTTCATTTAGT 26024 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| || || || ||||| ||||| | ||| ||| || Sbjct 25320 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACAATTACACTTGAAGTTGAAGGTAGT 25261 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || ||| | || ||| ||||| ||||||||||| | || || ||| Sbjct 25260 GACAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAA 25201 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||| | ||| || |||||||| |||||| | ||| | | |||||||| Sbjct 25200 CAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTATAAC 25141 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| ||||| || || |||||||| Sbjct 25140 ATTCAAAAGGAATCCACTCTCCATTTAGT 25112 >seq1461 Length=5937 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| | || || |||||||||||| | ||| ||| || Sbjct 4350 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATTACCTTAGAAGTTGAAGGTAGT 4409 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || ||| | || || |||||| ||||| ||||| | || |||||| Sbjct 4410 GACAACATTGAGAATGTTAAGACCAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAA 4469 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | || |||| || || ||||||||||||||| | ||| | | ||||| || Sbjct 4470 CAACGTCTCATTTTCGCCGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 4529 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| ||||| || || |||||||| Sbjct 4530 ATCCAAAAGGAATCCACTCTCCATTTAGT 4558 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| ||||| | || || ||||| ||||| | ||| ||| Sbjct 3437 AATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACAATTACTCTCGAAGTAGAAGGTTC 3496 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | |||||| |||||| || || ||||| | || || || Sbjct 3497 CGACAATATTGAAAATGTAAAAACCAAAATTCAAGATAAGGAAGGTATCCCACCAGACCA 3556 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | ||||||| || || ||||||||||||||| | ||| | | ||||| || Sbjct 3557 ACAACGTCTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTACAA 3616 Query 111279 TATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| ||||| || || |||||||| Sbjct 3617 CATTCAAAAGGAATCCACTCTCCATTTAGT 3646 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| || || || || ||||| || | ||| || | Sbjct 4122 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCA 4181 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| ||||||| ||||||||||| | || || ||| Sbjct 4182 GATAATATTGAAAATGTTAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAA 4241 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| || || ||||||||||||||| | ||| | | ||||| || Sbjct 4242 CAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGATTACAAC 4301 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| ||||| || || |||||||| Sbjct 4302 ATTCAAAAGGAATCCACCCTCCATTTAGT 4330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421795206896536