Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq316 165 8e-36 seq312 93.3 4e-14 seq339 82.4 8e-11 >seq316 Length=22015 Score = 165 bits (182), Expect = 8e-36 Identities = 305/444 (69%), Gaps = 5/444 (1%) Strand=Plus/Minus Query 23352 AAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGC 23411 ||| ||||| ||||| |||| || |||| ||||| |||| | ||||| | | Sbjct 20941 AAACTCAATGTATTGTGACATTGAACGTGAGTTCATACCGATTAAATCCACTGGTAATGA 20882 Query 23412 ATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTC 23471 |||| | | ||| ||||||| | ||| ||||| || || ||| |||| | || Sbjct 20881 ATCACAAATGAACTCTTTTTCACAAGCAACGGCATCCTTTATCATTGTTTCAATGATTTT 20822 Query 23472 TTCA-CTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGC 23530 | | | | | | || || | | || | | | ||| |||||||||||||||| | Sbjct 20821 TGGATCCAATTTTCT-TTGTAGTTTCGTATAGAGAAGACAAGCAAAATCACAATGTAAAC 20763 Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| | |||||||||||| ||||||||||| ||||||||||| |||| |||| Sbjct 20762 CTTCATCACGTGAAATCAATTCATTTGAAAATGTTAAACCTGGCATTAAACCTCTCTTTT 20703 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | |||||| |||| | ||| || || || ||||||||||| || ||||| | Sbjct 20702 TCAACCAAAAAATTGAACAAAAACTACCACTGAAAAATATACCCTCAACTGCTGCAAATG 20643 Query 23651 CCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAG 23710 | || | |||| |||| || ||| ||||| ||||||| || || ||| | | Sbjct 20642 CAACCAAACGTTCTGCAAA---TGAATTTGAATCATTAATCCATCTTAATGCCCATTCTG 20586 Query 23711 CCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCAT 23770 ||||| ||| ||||| ||||||||||||||| || || | | ||| || | Sbjct 20585 CCTTCTTTTTAACACATGGAATTGTTTCAATTGCATTAAATAATTTATCTTTAGTTTGTT 20526 Query 23771 TATCTGTTATATATGTATCAATTA 23794 ||||| | ||||| || ||||||| Sbjct 20525 TATCTTTAATATAAGTTTCAATTA 20502 Score = 136 bits (150), Expect = 4e-27 Identities = 170/231 (74%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 23778 TATATATGTATCAATT-AGTAAACT-----ATACATTTCAGAATGAATATTTTCAATAGC 23831 ||||||| ||| |||| | |||||| ||| |||||||||| ||||||||||| || Sbjct 20425 TATATATATATAAATTTAATAAACTTACCTATAGGTTTCAGAATGTATATTTTCAATTGC 20366 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 ||| ||||| ||||| |||||||| ||||| | | ||| || ||| | |||||| | Sbjct 20365 AATTTGAAAACCATAGAAACATCTTGCTTCTGGAATTTGTACTTCAGACATAAATCTAGT 20306 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 || | |||||| ||||||||||||||| |||||||| || || | ||||| | || Sbjct 20305 TGCAAGATTTTCATTAACAATACCATCAGATGCAGCAAAAAATGCCAAAACATGTGAGAT 20246 Query 23952 AAAATGTCTTTCATCAGTTGATAATTT---TTTCCAATCATTAATATCttt 23999 || || | ||||| | || || ||| || ||||||| | |||| || Sbjct 20245 GAAGTGACGTTCATTATCTGTTAGTTTATATTCCCAATCAACATTATCATT 20195 >seq312 Length=22109 Score = 93.3 bits (102), Expect = 4e-14 Identities = 183/269 (68%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 21069 CCAGAAGATCCAAAACCTTTATCCCCCCTTTCAGTAAAATTTATATTATCACATTTAACA 21128 |||| || |||||||| | | || |||| ||| || || | |||| || || Sbjct 8958 CCAGTTGAACCAAAACCACCAGCACCTCTTTGAGTTTCATCAATTTCATCAACTTC--CA 9015 Query 21129 ATGGTACAGTTGTAATATTT--TTCAAAAATTATTTGTGCTACTCTATCACCCTTAGAAA 21186 ||||| | | ||||| | || |||||| |||| ||| || | ||||||||| ||| || Sbjct 9016 ATGGTTCTGGTGTAACAATTCTTTCAAAGATTAATTGAGCGATTCTATCACCAATAGCAA 9075 Query 21187 TATGAAATGTAGATTTTCCATTATTAATTAGAATAATTCCAACAATACCTCTATAATCCC 21246 | |||| | ||| || || | || || | |||||| ||||||||||||| Sbjct 9076 TTGGAAAATCAACATTTGAATGGTTGAATAAAACGACACCAACATTACCTCTATAATCAG 9135 Query 21247 TATCTATAACACCTCCACCGATATCAATATTTTTATTTAAGGATAATCCTGATCTTGACG 21306 || |||||||| |||| ||||| || || | | ||| |||||||||| | Sbjct 9136 AGTCGATAACACCAGCACCACAGTCAATGAAATTTTTCCATGCTAAACCTGATCTTGGTG 9195 Query 21307 CTATTCTACCATAATATCCTTCTGGTATT 21335 | ||||||||||| |||||||| ||| Sbjct 9196 CAATTCTACCATAGGTACCTTCTGGAATT 9224 >seq339 Length=20847 Score = 82.4 bits (90), Expect = 8e-11 Identities = 195/293 (67%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 64418 AATAACGTTGATGTTATTGGAATTGATGAAGGGCAATTTTTTACTGATATAGTTGAATTT 64477 || ||| |||||| ||||| ||||||||||| |||||||| | || | || ||||| Sbjct 16053 AAAAACTATGATGTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTT 16112 Query 64478 TCTGAAAATATGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATAT 64537 |||| || | || ||| |||| |||| || ||| || | || | |||| |||| Sbjct 16113 AGTGAAGATTTAGCAAATCAAGGTAAAACCGTTATTATTGCCGCACTCGATGGTACATTC 16172 Query 64538 AAAAGAGAACCATTTGGTAATATCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAA 64597 ||||| ||||||| | || | | |||| || |||||| | | | ||| Sbjct 16173 CAAAGAAAACCATTCCAATCTGTCATTGACTTAGTATCAAAGGCTGAATATATTACAAAG 16232 Query 64598 TTAAATGCTATATGTAAAATATGTTTCAAAGATGCTGCATTTACTAAAAGATTAT--GCA 64655 |||| || | |||| |||| | ||| || ||||| ||| | |||| ||| Sbjct 16233 TTAACCGCCGTTTGTATGGTATGCTACAATGAAGCTGCCTTT--TCAAAGCGTATCGTTG 16290 Query 64656 AAAGTACTGAAATCGAATTAATTGGTGGAGAGGACAAATATAGTTCCGTGTGT 64708 ||||| || || ||||| ||||| || || ||||| | |||||| ||| Sbjct 16291 AAAGTGACGACATTGAATTGATTGGAGGTATTGATAAATACATTTCCGTTTGT 16343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521467720635400