Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq30 107 2e-18 seq27 104 2e-17 seq38 89.7 4e-13 seq12 82.4 7e-11 >seq30 Length=714265 Score = 107 bits (118), Expect = 2e-18 Identities = 147/204 (72%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCA-TTACCGCCGAAACGGAACCCGC 29020 |||||||| || ||||||| ||||| || ||||||| ||||| ||| ||| | Sbjct 356320 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCAATTACCTTGGAAGTTGAAGGATC 356379 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| || ||| |||||||||||| | || ||||| Sbjct 356380 AGATACTATTGAGAATGTCAAGACCAAGATTCAAGATAAAGAAGGTATCCCACCCGATCA 356439 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||||||||| ||||| || |||||| |||||||| ||| | | || ||||| Sbjct 356440 ACAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTACAA 356499 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||| |||||||| ||||| || Sbjct 356500 TATTCAAAAGGAATCAACTCTCCA 356523 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || || | || || |||||||||||| ||| ||| || Sbjct 356549 ATGCAAATCTTTGTAAAGACTCTTACAGGTAAAACCATTACCTTGGAAGTTGAAGGATCA 356608 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || ||| |||||||||||| | || || ||| Sbjct 356609 GATACTATTGAGAATGTTAAGACCAAGATTCAAGATAAAGAAGGTATCCCACCCGACCAA 356668 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| || ||||| || |||||| |||||||| ||| | | || |||||| Sbjct 356669 CAAAGACTCATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCTGACTACAAT 356728 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || || || ||||||||||| || Sbjct 356729 ATCCAAAAAGAATCTACTCTCCA 356751 >seq27 Length=1864556 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || || || || || ||||| |||||| ||| ||| || Sbjct 1695937 ATGCAAATTTTTGTTAAGACCTTAACTGGTAAAACAATTACCCTTGAAGTTGAAGGTTCA 1695878 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| |||||||||||| | || || ||| Sbjct 1695877 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCCGACCAA 1695818 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||||||||| ||||| || |||||| | |||||| | |||| | |||| || || Sbjct 1695817 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCCGACTATAAC 1695758 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| ||||||||| |||| | ||||| |||| || Sbjct 1695757 ATTCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTAAGAGGTGG 1695711 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || || || || || ||||| |||||| ||| ||| || Sbjct 1617506 ATGCAAATTTTTGTAAAGACCTTAACTGGTAAAACAATTACCCTTGAAGTTGAAGGTTCA 1617565 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||||||| | || |||||| Sbjct 1617566 GACACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAA 1617625 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||||||||| || || || |||||| | ||||| | ||| | | ||||| || Sbjct 1617626 CAAAGACTTATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACATTATCTGATTATAAC 1617685 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| ||||||||| |||| | ||||| |||| || Sbjct 1617686 ATTCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTAAGAGGTGG 1617732 >seq38 Length=878590 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || || ||||| || || ||||||||| ||| ||| | Sbjct 148868 ATGCAAATCTTTGTTAAGACCTTGACTGGTAAGACCATTACCTTGGAAGTTGAAGGTTCT 148927 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| |||||||||||| | || || ||| Sbjct 148928 GATACCATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAA 148987 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| || ||||| || |||||| | |||||| ||| | | |||||||| Sbjct 148988 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 149047 Query 29142 ATTCAGAAGGAATCTACTCTTCA-CATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||||||||| || | || | ||| ||||| ||||||| Sbjct 149048 ATTCAAAAAGAATCTACTCTCCATCTTGTTCTTA-GATTAAGAGGAGG 149094 >seq12 Length=1224149 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | ||||| || || || || ||||||||| ||| ||| | Sbjct 427190 AATGCAGATTTTCGTTAAAACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAAGGTTC 427249 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| ||||| || ||||||||| | || ||||| Sbjct 427250 AGATACCATCGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCA 427309 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTAC 29138 |||||||||||||||||| || |||||| | ||||| || | || | | |||||| Sbjct 427310 ACAAAGACTTATCTTTGCCGGTAAACAATTAGAAGACGGTCGTACCCTCT--CTGATTAC 427367 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 ||||| || || ||||| || || || Sbjct 427368 AATATCCAAAAAGAATCAACCCTCCA 427393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335718101370