Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq30 122 7e-23 seq27 113 4e-20 seq38 102 7e-17 seq12 96.9 3e-15 seq31 87.8 1e-12 >seq30 Length=714265 Score = 122 bits (134), Expect = 7e-23 Identities = 150/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCA-TTACCGCCGAAACGGAACCCGC 25093 |||||||| || ||||||| ||||| || ||||||| ||||| ||| ||| | Sbjct 356320 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCAATTACCTTGGAAGTTGAAGGATC 356379 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| || ||| |||||||||||| | || ||||| Sbjct 356380 AGATACTATTGAGAATGTCAAGACCAAGATTCAAGATAAAGAAGGTATCCCACCCGATCA 356439 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||||||| ||||| || ||||||||||||||| ||| | | || ||||| Sbjct 356440 ACAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTACAA 356499 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||||||||||||||| ||||| || Sbjct 356500 TATTCAAAAGGAATCAACTCTCCA 356523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || || | || || |||||||||||| ||| ||| || Sbjct 356549 ATGCAAATCTTTGTAAAGACTCTTACAGGTAAAACCATTACCTTGGAAGTTGAAGGATCA 356608 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || ||| |||||||||||| | || || ||| Sbjct 356609 GATACTATTGAGAATGTTAAGACCAAGATTCAAGATAAAGAAGGTATCCCACCCGACCAA 356668 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| || ||||| || ||||||||||||||| ||| | | || |||||| Sbjct 356669 CAAAGACTCATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCTGACTACAAT 356728 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || ||||| ||||||||||| || Sbjct 356729 ATCCAAAAAGAATCTACTCTCCA 356751 >seq27 Length=1864556 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || || || || || ||||| |||||| ||| ||| || Sbjct 1695937 ATGCAAATTTTTGTTAAGACCTTAACTGGTAAAACAATTACCCTTGAAGTTGAAGGTTCA 1695878 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| |||||||||||| | || || ||| Sbjct 1695877 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCCGACCAA 1695818 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||| ||||| || |||||||| |||||| | |||| | |||| || || Sbjct 1695817 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCCGACTATAAC 1695758 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| ||||||||| |||| | ||||| |||| || Sbjct 1695757 ATTCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTAAGAGGTGG 1695711 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || || || || || ||||| |||||| ||| ||| || Sbjct 1617506 ATGCAAATTTTTGTAAAGACCTTAACTGGTAAAACAATTACCCTTGAAGTTGAAGGTTCA 1617565 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| || ||||||||| | || |||||| Sbjct 1617566 GACACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAA 1617625 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||| || || || |||||||| ||||| | ||| | | ||||| || Sbjct 1617626 CAAAGACTTATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACATTATCTGATTATAAC 1617685 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| ||||||||| |||| | ||||| |||| || Sbjct 1617686 ATTCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTAAGAGGTGG 1617732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 ||||||||||| || | ||||| || || || ||||| |||||| ||| ||| Sbjct 1617275 AAAATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAAGGT 1617334 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || |||| |||||| |||||||||||| | || ||| Sbjct 1617335 TCCGACACCATTGAAAATGTCAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCCGAT 1617394 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||||||| | |||||||| || |||||||| |||||| ||| | | |||||| Sbjct 1617395 CAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTAC 1617454 Query 25212 AATATTCAAAAGGAATCTAC 25231 || |||||||| ||||| || Sbjct 1617455 AACATTCAAAAAGAATCAAC 1617474 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 25022 TAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGA 25081 ||||| | ||| ||||||||| || | ||||| || || || ||||| |||||| || Sbjct 1696177 TAATATT-TAATAATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACTATTACCTTAGA 1696119 Query 25082 AACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGT 25141 | ||| | |||| || | | | | ||| |||||| |||||||||||| | Sbjct 1696118 AGTTGAAGGCTCAGACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAAGGTAT 1696059 Query 25142 GCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTAT 25201 || || |||||||||||||| || || || |||||||| ||||| ||| | Sbjct 1696058 CCCACCCGACCAACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCT 1695999 Query 25202 GGCCGATTACAATATTCAAAAGGAATCTAC 25231 ||||||| || || ||||| ||||| || Sbjct 1695998 TTCCGATTATAACATCCAAAAAGAATCAAC 1695969 >seq38 Length=878590 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || || ||||| || || ||||||||| ||| ||| | Sbjct 148868 ATGCAAATCTTTGTTAAGACCTTGACTGGTAAGACCATTACCTTGGAAGTTGAAGGTTCT 148927 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| ||||| |||||||||||| | || || ||| Sbjct 148928 GATACCATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAA 148987 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| || ||||| || |||||||| |||||| ||| | | |||||||| Sbjct 148988 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 149047 Query 25215 ATTCAAAAGGAATCTACTCTTCA-CATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||||||||| || | || | ||| ||||| ||||||| Sbjct 149048 ATTCAAAAAGAATCTACTCTCCATCTTGTTCTTA-GATTAAGAGGAGG 149094 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 || ||||||||| || | |||||||| || || |||||||||||| ||| ||| Sbjct 148179 AACAATGCAAATCTTTGTTAAAACATTAACTGGTAAAACCATTACCCTAGAAGTTGAAGG 148238 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | || |||| ||||| |||||||||||| | || || Sbjct 148239 TTCCGACACCATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGA 148298 Query 25151 TCAACAAAGACTTATCTTTGC-GGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||||||||||| || || || || |||||||| |||||| ||| | |||||| Sbjct 148299 TCAACAAAGACTCATTTTCGCTCGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGATT 148358 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||| || ||||| ||||| || || || |||| Sbjct 148359 ACAACATCCAAAAAGAATCAACCCTCCATTTGGT 148392 >seq12 Length=1224149 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | ||||| || || || || ||||||||| ||| ||| | Sbjct 427190 AATGCAGATTTTCGTTAAAACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAAGGTTC 427249 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| ||||| || ||||||||| | || ||||| Sbjct 427250 AGATACCATCGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCA 427309 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTAC 25211 |||||||||||||||||| || |||||||| ||||| || | || | | |||||| Sbjct 427310 ACAAAGACTTATCTTTGCCGGTAAACAATTAGAAGACGGTCGTACCCTCT--CTGATTAC 427367 Query 25212 AATATTCAAAAGGAATCTACTCTTCA 25237 ||||| ||||| ||||| || || || Sbjct 427368 AATATCCAAAAAGAATCAACCCTCCA 427393 >seq31 Length=145395 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||||||||| || || || |||||| ||| ||| | Sbjct 8495 ATGCAAATCTTTGTCAAAACATTGACTGGTAAGACAATTACCTTAGAAGTTGAAGGTTCT 8436 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || || || |||||||||||| | || || ||| Sbjct 8435 GACACCATTGAGAATGTTAAAACCAAGATCCAAGATAAAGAAGGTATTCCACCCGACCAA 8376 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||| ||||| || ||||||||||||||| ||| | | || || ||| Sbjct 8375 CAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTATAAT 8316 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || ||||| ||||| ||||| || Sbjct 8315 ATACAAAAAGAATCAACTCTCCA 8293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796529644356