Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq30 105 7e-18 seq27 105 7e-18 seq38 89.7 5e-13 >seq30 Length=714265 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || |||||||||||| | || ||||||| | Sbjct 370044 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACCATCACCTTAGAAGTCGAAGGTTCA 370103 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| |||||| ||||| | |||||||| || ||||| | || || Sbjct 370104 GATACCATCGAAAACG-TCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCA 370162 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| || ||||| |||| |||| || || ||| || ||||| Sbjct 370163 ACAACGTTTAATCTTCGCCGGTAAACAATTGGAAGACGGTCGTACTCTCTCTGATTACAA 370222 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || | || || ||| |||| Sbjct 370223 TATCCAAAAAGAATCTACCCTCCATTTAGT 370252 >seq27 Length=1864556 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || |||||||| ||| | || || |||| || Sbjct 1617734 ATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACCATTACCTTAGAAGTAGAAGGTTCC 1617793 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| ||||||| |||||||| || ||||| | ||||| Sbjct 1617794 GACACCATTGAAAACG-TAAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCCGACCA 1617852 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||| | ||| || ||||| | || || | || || || || ||||| Sbjct 1617853 ACAAAGACTCATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 1617912 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| || || | || || ||| |||| Sbjct 1617913 CATCCAAAAAGAATCAACCCTCCATTTAGT 1617942 >seq38 Length=878590 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || ||||||||| || || ||||| | || || |||||||| ||| | || || |||| Sbjct 148179 AACAATGCAAATCTTTGTTAAAACATTAACTGGTAAAACCATTACCCTAGAAGTTGAAGG 148238 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | ||| |||| | ||||| | || ||||| || ||||| | || Sbjct 148239 TTCCGACACCATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGA 148298 Query 40806 CCAGCAACGACTCATCTACGCG-GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 || ||| ||||||| | ||| || ||||| | || || | || || ||| ||| | Sbjct 148299 TCAACAAAGACTCATTTTCGCTCGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGATT 148358 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||| || || | || || ||| Sbjct 148359 ACAACATCCAAAAAGAATCAACCCTCCAT 148387 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || ||||| ||| | || || |||| || Sbjct 148640 ATGCAAATTTTTGTTAAGACCTTAACTGGTAAGACCATTACCCTTGAAGTTGAAGGTTCC 148699 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || |||| |||||||| || ||||| | ||||| Sbjct 148700 GACACCATTGAAAACG-TAAAGGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGACCA 148758 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||| | ||| || ||||| | || || | || || || || ||||| Sbjct 148759 ACAAAGACTCATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 148818 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||| || || | || || ||| Sbjct 148819 CATCCAAAAAGAATCAACCCTCCAT 148843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218852227040