Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq36 147 2e-30 seq27 95.1 1e-14 >seq36 Length=2033623 Score = 147 bits (162), Expect = 2e-30 Identities = 442/683 (65%), Gaps = 77/683 (11%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||||||||| | |||||| | ||||| || | ||| || || || || || ||||| | Sbjct 730118 ACAAGCAAAGTTACAATGTAGACCTTCATCACGACTAATCAATTCATTGGAGAATGTCAA 730059 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAG--CGGCAAATGAACCAGAAAAG 16351 ||||||||||| |||| ||| || | |||||| || | | | || | |||| || Sbjct 730058 ACCTGGCATTAAACCTCTTTTCTTTAGCCAAAAGATGGAACAGAAACT--ACCACTGAAA 730001 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 || ||||||||||| || |||||||| ||||||| ||| | | | |||| || Sbjct 730000 AAGATACCTTCAACAGCTGCAAATGCCACCAATCTCTCTGCAAATGATCTAGAATTG--- 729944 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471 |||||| | ||||| | ||| || | ||| ||||| || | ||||| ||| Sbjct 729943 ---ATCCATCTCAAGGCCCATTCTGCCTTCTTTTTCACACATGGAATAGTTTCTATAGCA 729887 Query 16472 TTAAATAAATAA---tttttttCT------TTGCTAT-----------------CTAAAA 16505 || ||||| | | |||| |||| || ||| |||||| Sbjct 729886 TTGAATAATTTAGCTTTTTGTTCTGGGTTTTTAATATATGTATCAATTAAAAGACTAAAA 729827 Query 16506 TATAA----GT-----ATCT----------------ATTAGT--AAA---------CTAT 16529 || || || |||| ||| || ||| || | Sbjct 729826 TACAATAATGTTAATCATCTTGAATTTGAATCAATAATTGGTTTAAATTTCCTTACCTGT 729767 Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGG 16589 | |||| ||||||||||| || || || || || |||||||| || ||||| ||||| | Sbjct 729766 AAGTTTCAGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTGGCTTCTG 729707 Query 16590 ATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649 |||||| |||||| ||| | ||||| ||||| ||||| || ||||| || Sbjct 729706 GTATTTGAACTTCACTCATAAATTTAGTTGCTAGATTTTCATTAACAATACCATCTGAAG 729647 Query 16650 CTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT--TTTA 16706 |||||||||| || | || | ||| |||| |||||| || || | || | ||| Sbjct 729646 CTGCAAAAAATGCTAATACATTGGAAATGAAATGTTTTTCATTTTCATTTAACTTATTTT 729587 Query 16707 ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766 ||| ||| | ||| | | |||||| | ||||||| | ||||| || || || | | Sbjct 729586 CCCATTCATTGATATCACTGGCTAAATCAATCTCTTCTGCTGTCCAGAATGAGGCTTCTG 729527 Query 16767 CCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATACTTATTTA 16826 | | ||||||||| |||||||||||| ||| ||| ||||| | |||| | || | Sbjct 729526 CTTGTTTATACATATTCCATATGTCTGGGTATTTAATTGGAAATAGAACAAATCTA-TCC 729468 Query 16827 ATGTT-GGTTTTAAAATAGGTTC 16848 |||| ||||||||| ||||| Sbjct 729467 TTGTTCTCTTTTAAAATTGGTTC 729445 >seq27 Length=1864556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 200/297 (67%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 58103 TGATGTAATAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGCGAACG 58162 ||||||||| || || |||||||| || ||||| |||||| |||| || || | || Sbjct 792288 TGATGTAATTGGCATTGACGAAGGTCAGTTTTTCCCAGATGTTGTGGATTTCAGTGAGGA 792229 Query 58163 TATGGCAAACGATGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATTTTTAAGAGA 58222 | | || || | || ||||||||||| |||| ||| |||| || |||||| |||| | Sbjct 792228 TCTTGCCAATAAAGGTAAAATTGTAATCATTGCAGCTCTAGATGGAACATTTCAAAGAAA 792169 Query 58223 GCCATTTGGAAATATTTTAAAATTAATACCATGTGCTGAGTACGTTTCAAAGCTTACAGC 58282 ||||| || |||||||| | || || ||| | || | || || || || Sbjct 792168 ACCATTCCCAACCATTTTAAATCTCATTGGTAAAGCAGAGGATATTACCAAACTGACTGC 792109 Query 58283 CGTTTGCATGAATTGTTTTAATAGCGCATCGTTTTCTAAACGAA---TTGGAGATGAACA 58339 ||||| ||| |||||||||| || | || || ||| ||| || |||||| Sbjct 792108 AGTTTGTATGGTTTGTTTTAATGATGCTGCATTCTCAAAAAGAACCGTTTCTGATGAATC 792049 Query 58340 AGAAATAGAAGTTATAGGAGGCAAAGACAAGTATCAATCTGTATGTAGAAAATGTTA 58396 | ||||| | || || || | || || ||| || || ||||||| ||||| Sbjct 792048 TG---TAGAATTGATTGGTGGTACTGATAAATATATTTCAGTTTGTAGAAGTTGTTA 791995 Score = 82.4 bits (90), Expect = 7e-11 Identities = 177/261 (68%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 13556 ATAAATATAACACCTATTATACCTCTGTAATCACTATCTATTACCCCACCACCTATATCT 13615 ||||| || ||||| | |||||||||| ||| ||| || || || |||| | ||| Sbjct 788608 ATAAA-ATGACACCAACATTACCTCTGTAGTCAAAATCAATGACACCTGCACCGACATCA 788666 Query 13616 ATACAACTGTTTAATGATAATCCTGATCTTGGTGCTATCCTACCATAACATCCATCCGGA 13675 || || | || ||| ||||| |||||||| |||| || ||||| || || ||| Sbjct 788667 ATTGAATTCTTCCATGCCAATCCAGATCTTGGAGCTACTCTTCCATAGGTACCTTCTGGA 788726 Query 13676 ATAGATAAACAAATATCTGTTTTTACTAATAATCTATTTTTTGGACAAACTAAGTAATCG 13735 |||| | |||||| || | | |||| | || | ||| | ||| | | || Sbjct 788727 ATAGCAATTTGAATATCAGTCATAATTAATGCTTTACCTCTTGCAGGAACAATTGATTCT 788786 Query 13736 TAAGCACTATATAAATCGTATCCCGCCGACTTTTTTGATG-ACTTGGTTGGTATAGTTGC 13794 | ||||| ||||||| ||||| || | | ||||||| || | ||||||||||||| Sbjct 788787 TGTGCACTTGATAAATCATATCCAGCTGCATCTTTTGATCCACGTT-TTGGTATAGTTGC 788845 Query 13795 CGATTCAGAACtttttttAAC 13815 ||| || ||||||||| Sbjct 788846 GTTTTCTGATAATTTTTTAAC 788866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511687804400