Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04]
54 sequences; 23,375,662 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq36 147 2e-30
seq27 95.1 1e-14
>seq36
Length=2033623
Score = 147 bits (162), Expect = 2e-30
Identities = 442/683 (65%), Gaps = 77/683 (11%)
Strand=Plus/Minus
Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293
||||||||| | |||||| | ||||| || | ||| || || || || || ||||| |
Sbjct 730118 ACAAGCAAAGTTACAATGTAGACCTTCATCACGACTAATCAATTCATTGGAGAATGTCAA 730059
Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAG--CGGCAAATGAACCAGAAAAG 16351
||||||||||| |||| ||| || | |||||| || | | | || | |||| ||
Sbjct 730058 ACCTGGCATTAAACCTCTTTTCTTTAGCCAAAAGATGGAACAGAAACT--ACCACTGAAA 730001
Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411
|| ||||||||||| || |||||||| ||||||| ||| | | | |||| ||
Sbjct 730000 AAGATACCTTCAACAGCTGCAAATGCCACCAATCTCTCTGCAAATGATCTAGAATTG--- 729944
Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471
|||||| | ||||| | ||| || | ||| ||||| || | ||||| |||
Sbjct 729943 ---ATCCATCTCAAGGCCCATTCTGCCTTCTTTTTCACACATGGAATAGTTTCTATAGCA 729887
Query 16472 TTAAATAAATAA---tttttttCT------TTGCTAT-----------------CTAAAA 16505
|| ||||| | | |||| |||| || ||| ||||||
Sbjct 729886 TTGAATAATTTAGCTTTTTGTTCTGGGTTTTTAATATATGTATCAATTAAAAGACTAAAA 729827
Query 16506 TATAA----GT-----ATCT----------------ATTAGT--AAA---------CTAT 16529
|| || || |||| ||| || ||| || |
Sbjct 729826 TACAATAATGTTAATCATCTTGAATTTGAATCAATAATTGGTTTAAATTTCCTTACCTGT 729767
Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGG 16589
| |||| ||||||||||| || || || || || |||||||| || ||||| ||||| |
Sbjct 729766 AAGTTTCAGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTGGCTTCTG 729707
Query 16590 ATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649
|||||| |||||| ||| | ||||| ||||| ||||| || ||||| ||
Sbjct 729706 GTATTTGAACTTCACTCATAAATTTAGTTGCTAGATTTTCATTAACAATACCATCTGAAG 729647
Query 16650 CTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT--TTTA 16706
|||||||||| || | || | ||| |||| |||||| || || | || | |||
Sbjct 729646 CTGCAAAAAATGCTAATACATTGGAAATGAAATGTTTTTCATTTTCATTTAACTTATTTT 729587
Query 16707 ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766
||| ||| | ||| | | |||||| | ||||||| | ||||| || || || | |
Sbjct 729586 CCCATTCATTGATATCACTGGCTAAATCAATCTCTTCTGCTGTCCAGAATGAGGCTTCTG 729527
Query 16767 CCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATACTTATTTA 16826
| | ||||||||| |||||||||||| ||| ||| ||||| | |||| | || |
Sbjct 729526 CTTGTTTATACATATTCCATATGTCTGGGTATTTAATTGGAAATAGAACAAATCTA-TCC 729468
Query 16827 ATGTT-GGTTTTAAAATAGGTTC 16848
|||| ||||||||| |||||
Sbjct 729467 TTGTTCTCTTTTAAAATTGGTTC 729445
>seq27
Length=1864556
Score = 95.1 bits (104), Expect = 1e-14
Identities = 200/297 (67%), Gaps = 6/297 (2%)
Strand=Plus/Minus
Query 58103 TGATGTAATAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGCGAACG 58162
||||||||| || || |||||||| || ||||| |||||| |||| || || | ||
Sbjct 792288 TGATGTAATTGGCATTGACGAAGGTCAGTTTTTCCCAGATGTTGTGGATTTCAGTGAGGA 792229
Query 58163 TATGGCAAACGATGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATTTTTAAGAGA 58222
| | || || | || ||||||||||| |||| ||| |||| || |||||| |||| |
Sbjct 792228 TCTTGCCAATAAAGGTAAAATTGTAATCATTGCAGCTCTAGATGGAACATTTCAAAGAAA 792169
Query 58223 GCCATTTGGAAATATTTTAAAATTAATACCATGTGCTGAGTACGTTTCAAAGCTTACAGC 58282
||||| || |||||||| | || || ||| | || | || || || ||
Sbjct 792168 ACCATTCCCAACCATTTTAAATCTCATTGGTAAAGCAGAGGATATTACCAAACTGACTGC 792109
Query 58283 CGTTTGCATGAATTGTTTTAATAGCGCATCGTTTTCTAAACGAA---TTGGAGATGAACA 58339
||||| ||| |||||||||| || | || || ||| ||| || ||||||
Sbjct 792108 AGTTTGTATGGTTTGTTTTAATGATGCTGCATTCTCAAAAAGAACCGTTTCTGATGAATC 792049
Query 58340 AGAAATAGAAGTTATAGGAGGCAAAGACAAGTATCAATCTGTATGTAGAAAATGTTA 58396
| ||||| | || || || | || || ||| || || ||||||| |||||
Sbjct 792048 TG---TAGAATTGATTGGTGGTACTGATAAATATATTTCAGTTTGTAGAAGTTGTTA 791995
Score = 82.4 bits (90), Expect = 7e-11
Identities = 177/261 (68%), Gaps = 3/261 (1%)
Strand=Plus/Plus
Query 13556 ATAAATATAACACCTATTATACCTCTGTAATCACTATCTATTACCCCACCACCTATATCT 13615
||||| || ||||| | |||||||||| ||| ||| || || || |||| | |||
Sbjct 788608 ATAAA-ATGACACCAACATTACCTCTGTAGTCAAAATCAATGACACCTGCACCGACATCA 788666
Query 13616 ATACAACTGTTTAATGATAATCCTGATCTTGGTGCTATCCTACCATAACATCCATCCGGA 13675
|| || | || ||| ||||| |||||||| |||| || ||||| || || |||
Sbjct 788667 ATTGAATTCTTCCATGCCAATCCAGATCTTGGAGCTACTCTTCCATAGGTACCTTCTGGA 788726
Query 13676 ATAGATAAACAAATATCTGTTTTTACTAATAATCTATTTTTTGGACAAACTAAGTAATCG 13735
|||| | |||||| || | | |||| | || | ||| | ||| | | ||
Sbjct 788727 ATAGCAATTTGAATATCAGTCATAATTAATGCTTTACCTCTTGCAGGAACAATTGATTCT 788786
Query 13736 TAAGCACTATATAAATCGTATCCCGCCGACTTTTTTGATG-ACTTGGTTGGTATAGTTGC 13794
| ||||| ||||||| ||||| || | | ||||||| || | |||||||||||||
Sbjct 788787 TGTGCACTTGATAAATCATATCCAGCTGCATCTTTTGATCCACGTT-TTGGTATAGTTGC 788845
Query 13795 CGATTCAGAACtttttttAAC 13815
||| || |||||||||
Sbjct 788846 GTTTTCTGATAATTTTTTAAC 788866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462511687804400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |