Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq27 89.7 4e-13 seq38 86.0 5e-12 seq31 84.2 2e-11 seq30 82.4 6e-11 >seq27 Length=1864556 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | ||| || || || || || || || |||||||| || Sbjct 1617960 CCACCTCTTAATCTGAGTACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAA 1617901 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| |||||||| || | | ||||||||||| || Sbjct 1617900 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGGTCGGGTGGG 1617841 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| |||||| ||| || | | | |||| ||| || || Sbjct 1617840 ATACCTTCTTTGTCTTGAATTTTAGCCTTTACGTTTTCAATGGTGTCGGAACCTTCTACT 1617781 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | |||||| || || || |||| ||| || ||||| |||||||| Sbjct 1617780 TCTAAGGTAATGGTTTTACCAGTCAAAGTTTTAACAAAAATTTGCAT 1617734 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | || || || || ||| || || ||||||||||| || Sbjct 1618188 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCAGAG 1618129 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| ||||| || || || | ||||||||||| || Sbjct 1618128 AGGGTACGACCATCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCGGGTGGA 1618069 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| |||||| || || | | | | || ||| || || Sbjct 1618068 ATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCTGAACCTTCAACT 1618009 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | |||||| || || || |||| ||||| ||||| |||||||| Sbjct 1618008 TCAAGGGTAATAGTTTTACCAGTCAAGGTCTTTACAAAAATTTGCAT 1617962 >seq38 Length=878590 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | ||| | |||||| || || || || || || |||||||| || Sbjct 148866 CCACCTCTGAGTCTGAGTACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAA 148807 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| |||||||| || | | ||||||||||| || Sbjct 148806 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGGTCGGGTGGG 148747 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||| || ||| || | | | |||| ||| || || Sbjct 148746 ATACCTTCTTTGTCTTGAATCTTAGCCTTTACGTTTTCAATGGTGTCGGAACCTTCAACT 148687 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | |||||| ||||| || || | ||||| ||||| |||||||| Sbjct 148686 TCAAGGGTAATGGTCTTACCAGTTAAGGTCTTAACAAAAATTTGCAT 148640 >seq31 Length=145395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTT 45168 |||||||| | ||| | || || || || || || || |||||||| ||||| | | Sbjct 8497 CCACCTCTAAGTCTGAGAACTAAATGTAGTGTTGATTCTTTTTGAATGTTATAGTCAGAT 8556 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 | | ||| | || |||| |||||| || || || || | | ||||||||||| || Sbjct 8557 AAAGTA-CGACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGG 8615 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||| || || ||||| ||||| | | | | || ||| || || Sbjct 8616 GATACCCTCTTTATCTTGGATTTTGGTTTTAACATTTTCAATGGTATCAGAACCTTCTAC 8675 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | |||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 8676 CTCTAAGGTAATTGTCTTACCAGTCAAAGTCTTTACAAATATTTGCAT 8723 >seq30 Length=714265 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | ||| | ||| || || || || || || || || ||||| || Sbjct 370270 CCACCTCTAAGTCTGAGTACTAAATGGAGGGTAGATTCTTTTTGGATATTGTAATCAGAG 370211 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| |||| |||||| |||||||| || || || ||||| ||||| || Sbjct 370210 AGAGTACGACCGTCTTCCAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCGGGTGGG 370151 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||||| ||| || | | | | || ||| || || Sbjct 370150 ATACCTTCTTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTATCTGAACCTTCGACT 370091 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | ||| || || || || || | ||| || ||||||||||||||| Sbjct 370090 TCTAAGGTGATGGTTTTACCAGTTAAAGTTTTAACAAAGATTTGCATG 370043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074939991134