Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq33 223 3e-53 seq36 143 2e-29 seq27 82.4 7e-11 >seq33 Length=884058 Score = 223 bits (246), Expect = 3e-53 Identities = 1073/1681 (64%), Gaps = 89/1681 (5%) Strand=Plus/Minus Query 36936 TTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTC 36995 ||| || ||||| ||||||||||| || ||||| || | | | |||| ||||| Sbjct 112001 TTGGTCAATAAAAGCACCTCTGTCAGCAGCCATATCAATCAAGGCTCTTTGTTTAATCTC 111942 Query 36996 CCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATAGA 37052 |||||| || || || | |||||| | || ||||| | ||| | || ||||| ||| Sbjct 111941 CCAAACTGTCTTGTAAAGTTGTTTCAAATCCTCTGGAATCTCTGGAATATTTTGAACAGA 111882 Query 37053 ACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTT--ATT 37110 |||| ||| | ||| | || || | ||| | ||||| | | | | || Sbjct 111881 ACCACGGTGTGCTATAATCTTGTTTTTCAAGTCCATTGACCACAG--TCCAAGCTCCATA 111824 Query 37111 AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTA 37170 || || | | || ||| | || ||| || || | ||| |||||||| | | Sbjct 111823 AGATCAGAAAGCAATTGCTTATTAATAATTGTAAATTCACCTGCTAAGACTCTTCTGGAA 111764 Query 37171 TATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGAT 37230 ||||| || ||||| |||||||||| | |||||| |||| ||| |||||| || || Sbjct 111763 TATATGTTACTAGTGTATGGTTCAAAAGCCTCATTGTTACCTAAAATTTGACTGGTGGAG 111704 Query 37231 GCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTT 37290 || || |||||||| ||||||| ||| ||||| | || ||| | || |||| Sbjct 111703 GCTGTGGGCATTGGGGCTATTAAAAGTGAGTTTCTAAGACCGTGTTTGGCGATA-TCTTC 111645 Query 37291 TTT-AGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAG 37349 || |||| ||||||| ||| ||| ||||| | ||||||||| ||||| || Sbjct 111644 CTTGAGTTGTTTCCAATTCCAACGATCGGTTGGAGTGACACCCCACATATCGTATTGGAG 111585 Query 37350 AATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAG 37409 ||||||| ||| ||||||||| | | ||| ||| ||||| | | | ||| || Sbjct 111584 TATACCTTGACTTGCTGGAGAACCTTGGAATGATGAATAGGGTCCATCCTTATGAGCGAG 111525 Query 37410 TTCGCAACT-AGATTCT-AGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAAT 37467 ||| ||| || || | || ||| | || || || ||| |||| | ||||| ||| Sbjct 111524 TTCT--ACTGAGGCGCTTAAAGCTGCAAAGTAGATAGTCTCGGAAATCTCAATATTCAAT 111467 Query 37468 ATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAA-TATAAACACATCAGCCAAACC 37526 | ||| || | || || | ||| | || || || |||||||| | ||| Sbjct 111466 TTAGCTGCACCTGTGGATTCAAAAGG-TAGACGAAGGGCTAAGAAAACATCAGCAAGACC 111408 Query 37527 CTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGAC---GATTCTATCAC 37583 |||| ||| ||||| || ||||| || || |||| | | |||| || Sbjct 111407 TTGAATACCAATACCAATTGGTCTGTGACGGAGGTTG---CTAGTCTTAGCTTCTGGGAC 111351 Query 37584 TGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAA-TTA 37642 |||||||||||| |||| || || || || |||||| || || || || |||| || Sbjct 111350 TGGATAATAATTTCTATCAATAATCTTGTTGAGATTTCTAGTTATAATCTTTGTAACTTC 111291 Query 37643 TTCTCAA--CT--TG-TCGAACATAAATACGTTATTATTAACAAATT------------T 37685 | | || || || || || ||| | || |||| | | ||| | Sbjct 111290 ATATAAAGCCTGATGATCAAATTCAAAGGCTTTCTTATAATAAGATTCTGGATTGGTGTT 111231 Query 37686 A---------CTCAACGA------------AATAGATCCTAGATTACATACAGCAACTTC 37724 | ||||| | |||||| | || ||||| || || ||||| Sbjct 111230 AGGAACCTCTCTCAAAAACTTTGGTAATGCAATAGAGGCAAGGTTACAAACTGCGACTTC 111171 Query 37725 ATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAA 37784 ||| | |||| |||||||| ||||| | ||| ||| ||| || ||||| Sbjct 111170 CTCTGGAGATGTGTATTGAATAATCTCAGTACACAAATTGGATGATGAAATGGTACCCAA 111111 Query 37785 ATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTG 37844 || ||||||| ||||| | |||||||| |||||| || || ||||| || || || Sbjct 111110 GTTCTTTTGATTTGATTTCTCATTACAAGCATCTTTGTAGAGAATATAAGGTGTACCAGT 111051 Query 37845 TTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTG--CTTTAACGA----TCGC 37898 ||| ||||||| || | ||||| ||| ||| ||||| | ||||| | || Sbjct 111050 TTCAATTTGAGATTCCACAATAGCAAACCACAAA--TCTTGAGCCTTAACAACTTTTCTA 110993 Query 37899 TTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATAC 37958 |||| | |||||| | |||| | ||| | ||| | || |||| | | | Sbjct 110992 GCTAATCCTGGAGTTTGTT-CATATTTGAGATAAAGTTTTCTGAA----TTCCTC--TCC 110940 Query 37959 ATCGCATAATCCTGGACATTCG----CAT--GGACACATTAGAGACCATTCTTCATCTTT 38012 || ||| | | ||| | | ||| ||||| | || ||||| ||||||| | Sbjct 110939 ATGGCACTCTGCGAGACCTGGGGCCTCATTAGGACAAAAGAGGGACCAATCTTCATTTCC 110880 Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCT 38072 || ||||||||||| | |||| | ||| | ||| ||||| || | | Sbjct 110879 AGGAACACGTTCCATAAAGAGATCACAAATCCAAAGGGCATAGAATAAGTCACGAGCACG 110820 Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAA-TCGAATATATCAGCGTGCC 38131 | ||||| || || ||| |||||| || | | || || || | ||||||||||| Sbjct 110819 AATCTCTTCCTTACCATGATT-TTTCTTTAGATCCAAGAACTCAAAGACATCAGCGTGCC 110761 Query 38132 ATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATC 38191 |||| |||| || | | | || ||| ||| ||| | ||||| || | | ||| | Sbjct 110760 ATGGCTCTAAGTATACTGCAAAAGCACCTTTTCTCTTACCGCCTCCTTGGTCTACATAAC 110701 Query 38192 TAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC 38251 | | |||| ||| ||| | |||||| ||||||| |||||| || | ||||| | | Sbjct 110700 GAGCAGTGTCGTTAAATACACGTAACATTGGTACTAAACCATTGGAAGTTCCGTTAGTTC 110641 Query 38252 C--GGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT-CCTATTCCACCTG 38308 | ||||||| | | | ||| || || || | | | |||| || |||||||| | Sbjct 110640 CACGGATATAGGATTGAGC--AGCACGAATCTTG-TGAACTGCAATACCAATTCCACCAG 110584 Query 38309 CATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCAT 38368 || ||| || || ||||||||||| || ||||| | ||||| || || || | Sbjct 110583 CAGATTTACTAATCAATGCGCATTGTTTCAAAGTATCGTAGATACCGTCAATGGAATCCT 110524 Query 38369 CCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATA 38428 | || ||| | | | |||||| ||||| ||||| ||||| || || || || || | Sbjct 110523 CTTTCATTTGAACCAAGAAACAAGATGACATCTGAGGGAATGGTGTACCAGCATTGAACA 110464 Query 38429 ATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACAT 38488 ||||||||| ||||| | ||| | || || | | | ||| || || | || Sbjct 110463 ATGTAGGAGTAGCATGAGTAAACAACTTCATGGAGAGCTTTTCATAAGTCTCAAAAGCAG 110404 Query 38489 CATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTT 38548 | | | ||| || || ||||| | ||| || ||||| | ||||||||| ||||||| Sbjct 110403 CGTTCAAGTCAGTTCCATGTATACCAATAGAGACTCTCATCAACATATGTTGAGGTCTTT 110344 Query 38549 C 38549 | Sbjct 110343 C 110343 >seq36 Length=2033623 Score = 143 bits (158), Expect = 2e-29 Identities = 210/294 (71%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 |||| |||||||||||||| || || ||||| || ||||||||||||| || |||| Sbjct 729763 TTTCAGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTGGCTTCTGGTA 729704 Query 11985 ACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 || || || | ||| |||| | |||| ||| ||||| ||||||||||| || | Sbjct 729703 TTTGAACTTCACTCAT-AAATTTAGTTGCTAGATTTTCATTAACAATACCATCTGAAGCT 729645 Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA---TCC 12100 ||||||||||||| || || || || | |||||| | || | |||| ||| ||| Sbjct 729644 GCAAAAAATGCTAATACATTGGAAATGAAATGTTTTTCATTTTCATTTAACTTATTTTCC 729585 Query 12101 CAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGAT 12160 || |||| | ||| | | |||||| | ||||| | ||||| || || ||| | Sbjct 729584 CATTCATTGATATCACTGGCTAAATCAATCTCTTCTGCTGTCCAGAATGAGGCTTCTGCT 729525 Query 12161 TGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 ||||||||||| ||||| || || | || ||||| || || | ||| || ||| Sbjct 729524 TGTTTATACATATTCCATATGTCTGGGTATTTAATTGGAAATAGAACAAATCTA 729471 Score = 143 bits (158), Expect = 2e-29 Identities = 217/302 (72%), Gaps = 19/302 (6%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||||| | |||||||| |||||| || | ||| || | |||||| || ||||| Sbjct 730120 AAACAAGCAAAGTTACAATGTAGACCTTCATCACGACTAATCAATTCATTGGAGAATGTC 730061 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG--CAGCAAATGAACCAGAAA 11744 || || ||||| || |||| ||| |||| |||||| || | ||| || | |||| | Sbjct 730060 AAACCTGGCATTAAACCTCTTTTCTTTAGCCAAAAGATGGAACAGAAACT--ACCACTGA 730003 Query 11745 AGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAG 11804 | || || || || |||||||||||||| || | ||| ||| || | || | |||| Sbjct 730002 AAAAGATACCTTCAACAGCTGCAAATGCCACCAATCTCTCTGCAAA-----TGAT-CTAG 729949 Query 11805 A---TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 | |||||| | |||||| || || |||||||| || ||| || |||||||||| Sbjct 729948 AATTGATCCATCTCAAGGCCCATTCTGCCTTCTTTTTCACACATGGAATAGTTTCTATAG 729889 Query 11862 CGTTAAATAAAT--GCATTTT-TTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 | || ||||| | || |||| |||| || | | | ||||||||| ||||| | || Sbjct 729888 CATTGAATAATTTAGCTTTTTGTTCTGGGTT---TTTAATATATGTATCAATTAAAAGAC 729832 Query 11919 TA 11920 || Sbjct 729831 TA 729830 >seq27 Length=1864556 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 55875 TTGGAATAGACGAAGGACAATTCTTTAATGATATTGTAGAGTTTTGTGAATATATAGCAA 55934 |||| || |||||||| || || || ||| |||| || || |||| || | || | Sbjct 792280 TTGGCATTGACGAAGGTCAGTTTTTCCCAGATGTTGTGGATTTCAGTGAGGATCTTGCCA 792221 Query 55935 ATAAAGGAAAAATTGTTATCGTTGCTGCATTAGATGGAACATATGAACGTAAACCATT 55992 ||||||| |||||||| ||| |||| || |||||||||||| | || | |||||||| Sbjct 792220 ATAAAGGTAAAATTGTAATCATTGCAGCTCTAGATGGAACATTTCAAAGAAAACCATT 792163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524483745760