Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq36 131 2e-25 >seq36 Length=2033623 Score = 131 bits (144), Expect = 2e-25 Identities = 382/581 (66%), Gaps = 18/581 (3%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 |||||||||||| ||| | |||||| ||||| | ||| | || || || || || Sbjct 730408 TTTTGATATTCAGCTACTTTACCTTCAAAAAAGTTTGATTTTCTTTGCAAAGAAATCATT 730349 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 13700 ||||| |||| || ||||| | || |||| | || | |||| || | | | Sbjct 730348 TCCATCCAATCGAAAGGATTGGTAGAATTAAAAATCTTTTTGTAACCAAGAGAGACAACT 730289 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760 | | ||| || ||||||||| ||||| ||||| | |||||||| || || Sbjct 730288 AGACGATCTGCGCAAAACTCAATGTATTGTGACATGGCTCTGCTGTTCATACCAATGAGA 730229 Query 13761 TTTACAGGAATTATATTG-GTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | || || | | ||| |||| |||||| ||||| | ||||| ||||| ||||| Sbjct 730228 TCAACTGGTAG-AGATTCAGTTACAAATTCCTTTTCACATGCAACAGCATCTTTGATAAT 730170 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAA---AAATTAAACACGC 13876 | |||| || | || | | ||||| || ||||| | | ||||| || Sbjct 730169 GTCTATAATGATTT--TTTCATCTAATCTATTTACGA-GTTTACTGTAGAGCAAACAAGC 730113 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||| | |||||| || || ||||| | |||||| | ||| || || ||||| || ||||| Sbjct 730112 AAAGTTACAATGTAGACCTTCATCACGACTAATCAATTCATTGGAGAATGTCAAACCTGG 730053 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTG--CAGCAAATGACCCGGAAAAGAATATT 13994 ||| || |||| ||| |||| |||||| || | ||| || | | | ||||| ||| Sbjct 730052 CATTAAACCTCTTTTCTTTAGCCAAAAGATGGAACAGAAACTACCACTGAAAAAGATA-- 729995 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || ||||| || ||||| || | |||| ||| |||| ||| ||| || || || Sbjct 729994 CCTTCAACAGCTGCAAATGCCACCAATCTCTCTGCAAATGATCTAGAATTGATCCATCTC 729935 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 | |||||||| | || ||||| | | | || ||||| |||||||| ||| Sbjct 729934 AAG------GCCCATTCTGCCTTCTTTTTCACACATGGAATAGTTTCTATAGCATTGAAT 729881 Query 14115 AAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14155 || | | || | || | || ||| ||||||||||| Sbjct 729880 AATTTAGCTTTTTGTTCTGGGTTTTTAATATATGTATCAAT 729840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 221/324 (68%), Gaps = 13/324 (4%) Strand=Plus/Minus Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 ||||||| || || ||||| || || || || |||||||| || ||||| ||||| | Sbjct 729763 TTTCAGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTGGCTTCTGGTA 729704 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCG--GCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| ||||| | | | | ||| | || | |||||||||||| |||||||| ||| Sbjct 729703 TTTGAACTTC--ACTCATAAATTTAGTTGCTAGATTTTCATTAACAATACCATCTGAAGC 729646 Query 14288 TGCAAAAAATGCCAATATGTTTTTAAT--AAAGTATTGC-TCTTCATTGTTGAGT--TTT 14342 |||||||||||| |||| || ||| || || || | | ||||| || | | ||| Sbjct 729645 TGCAAAAAATGCTAATACATTGGAAATGAAATGTTTTTCATTTTCAT--TTAACTTATTT 729588 Query 14343 TTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14402 | ||| || | ||| | | | ||| | || || ||||||| || || | Sbjct 729587 TCCCATTCATTGATATCACTGGCTAAATCAATCTCTTCTGCTGTCCAGAATGAGGCTTCT 729528 Query 14403 GCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGAA 14462 |||| ||||||||| |||||| ||| ||| || ||||| | |||||||| Sbjct 729527 GCTTGTTTATACATATTCCATATGTCTGGGTATTTAATTGGAAATAGAACAAATCT-ATC 729469 Query 14463 GATGTT-TCTTTAAGAATTGGTTC 14485 |||| ||||| | ||||||||| Sbjct 729468 CTTGTTCTCTTTTAAAATTGGTTC 729445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727676183600