Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq36 132 5e-26 >seq36 Length=2033623 Score = 132 bits (146), Expect = 5e-26 Identities = 382/580 (66%), Gaps = 16/580 (3%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 |||||||||||| ||| | |||||||||||| | ||| | || || || || || Sbjct 730408 TTTTGATATTCAGCTACTTTACCTTCAAAAAAGTTTGATTTTCTTTGCAAAGAAATCATT 730349 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAAT 13488 ||||| ||||||| ||||| || || |||| | || | |||| || | | | Sbjct 730348 TCCATCCAATCGAAAGGATTGGTAGAATTAAAAATCTTTTTGTAACCAAGAGAGACAACT 730289 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548 | | ||| || ||||||||| ||||| ||||| | |||||||| || || Sbjct 730288 AGACGATCTGCGCAAAACTCAATGTATTGTGACATGGCTCTGCTGTTCATACCAATGAGA 730229 Query 13549 TTTACAGGAATTATATT-AGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | || || | | ||| ||||| |||||| ||||| | ||||| || || ||||| Sbjct 730228 TCAACTGGTAG-AGATTCAGTTACAAATTCCTTTTCACATGCAACAGCATCTTTGATAAT 730170 Query 13608 AATCTTAATAATG-TCATTAGAAGGAGGATATTTTAGATGTTTAA---AAATTAAACACG 13663 ||| |||||| | || | | ||||| || ||||| | | ||||| | Sbjct 730169 G-TCT--ATAATGATTTTTTCATCTAATCTATTTACGA-GTTTACTGTAGAGCAAACAAG 730114 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 |||| | |||||| || || ||||| | |||||| | ||| || || ||||| || |||| Sbjct 730113 CAAAGTTACAATGTAGACCTTCATCACGACTAATCAATTCATTGGAGAATGTCAAACCTG 730054 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 13783 |||| || |||| ||| |||| |||||| || | | ||| || || || || | Sbjct 730053 GCATTAAACCTCTTTTCTTTAGCCAAAAGATGGAACAGAAACTACCACTGAAAAAGATAC 729994 Query 13784 CCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCC 13843 | ||||| || ||||| || | | || ||| |||| ||| ||| |||| Sbjct 729993 CTTCAACAGCTGCAAATGCCACCAATCTCTCTGCAAATGATCTAGAATTG------ATCC 729940 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 || | |||||||| | || ||||| | | | || ||||| || |||||||||| Sbjct 729939 ATCTCAAGGCCCATTCTGCCTTCTTTTTCACACATGGAATAGTTTCTATAGCATTGAATA 729880 Query 13904 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943 | | | || | || | || ||| ||||||||||| Sbjct 729879 ATTTAGCTTTTTGTTCTGGGTTTTTAATATATGTATCAAT 729840 Score = 100 bits (110), Expect = 3e-16 Identities = 201/294 (68%), Gaps = 7/294 (2%) Strand=Plus/Minus Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 ||||||| || || ||||| || || || || |||||||| |||||||| ||||||| Sbjct 729763 TTTCAGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTGGCTTCTGGTA 729704 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 ||| || || |||| | ||| | |||||||||||||||||||| ||||| Sbjct 729703 TTTGAACTTCACTCATAAATTTAGTTGCTAGATTTTCATTAACAATACCATCTGAAGCTG 729644 Query 14078 CAAAAAATGCCAATATGTTTTTAAT--AAAGTATTGC-TCTTCATTGTTGAGT--TTTTT 14132 |||||||||| |||| || ||| || || || | | ||||| || | | |||| Sbjct 729643 CAAAAAATGCTAATACATTGGAAATGAAATGTTTTTCATTTTCAT--TTAACTTATTTTC 729586 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 ||| || | ||| | | | ||| | || || ||||||| || || | || Sbjct 729585 CCATTCATTGATATCACTGGCTAAATCAATCTCTTCTGCTGTCCAGAATGAGGCTTCTGC 729526 Query 14193 TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 || ||||||||| |||||| ||| ||| || ||||| | |||||||| Sbjct 729525 TTGTTTATACATATTCCATATGTCTGGGTATTTAATTGGAAATAGAACAAATCT 729472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588476952560